Wall clock time and date at job start Mon Mar 30 2020 01:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48500 * 109.47520 * 270.00364 * 3 2 1 5 5 H 1.48504 * 109.47004 * 30.00116 * 3 2 1 6 6 H 1.48502 * 109.47002 * 150.00019 * 3 2 1 7 7 C 1.38636 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00310 * 0.02562 * 7 2 1 9 9 O 1.34929 * 119.99824 * 179.72261 * 7 2 1 10 10 C 1.42905 * 116.99984 * 180.27471 * 9 7 2 11 11 C 1.52994 * 109.47164 * 180.02562 * 10 9 7 12 12 H 1.09006 * 112.74645 * 46.26720 * 11 10 9 13 13 C 1.53511 * 113.47751 * 177.11513 * 11 10 9 14 14 C 1.53517 * 83.57630 * 140.79163 * 13 11 10 15 15 N 1.47479 * 87.93205 * 333.97602 * 14 13 11 16 16 H 0.96995 * 120.00173 * 359.97438 * 1 2 3 17 17 H 1.08998 * 109.47334 * 300.00393 * 10 9 7 18 18 H 1.09004 * 109.46821 * 60.00647 * 10 9 7 19 19 H 1.09000 * 114.17501 * 254.43830 * 13 11 10 20 20 H 1.09003 * 114.17058 * 27.14910 * 13 11 10 21 21 H 1.08998 * 113.47361 * 219.21044 * 14 13 11 22 22 H 1.08998 * 113.47135 * 88.74297 * 14 13 11 23 23 H 1.00898 * 111.00057 * 275.31862 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5474 1.4401 0.7000 7 6 2.0090 -1.2006 -0.0005 8 1 1.4691 -2.1360 -0.0014 9 8 3.3583 -1.2006 -0.0062 10 6 4.0071 -2.4738 -0.0125 11 6 5.5238 -2.2733 -0.0177 12 1 5.8534 -1.5313 0.7097 13 6 6.3147 -3.5875 0.0462 14 6 7.2420 -2.8772 -0.9499 15 7 6.0843 -2.0638 -1.3657 16 1 -0.4850 0.8400 0.0004 17 1 3.7179 -3.0334 0.8771 18 1 3.7105 -3.0283 -0.9029 19 1 6.7706 -3.7874 1.0159 20 1 5.7874 -4.4463 -0.3692 21 1 7.6175 -3.5320 -1.7363 22 1 8.0308 -2.2971 -0.4710 23 1 5.5366 -2.5444 -2.0636 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260240881.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:09 Heat of formation + Delta-G solvation = -25.854293 kcal Electronic energy + Delta-G solvation = -8530.768235 eV Core-core repulsion = 6765.765997 eV Total energy + Delta-G solvation = -1765.002238 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.77362 -38.16629 -34.15077 -30.02738 -28.12890 -26.29797 -23.63679 -21.43584 -19.78022 -17.72638 -16.69699 -16.43115 -15.82918 -15.40027 -14.50242 -14.24607 -13.97154 -13.77427 -12.99293 -12.85206 -12.05226 -11.86064 -11.65342 -11.51265 -11.45321 -10.41672 -9.51033 -8.30677 -6.01384 1.36954 1.41289 1.60436 2.42880 3.00583 3.05400 3.35764 3.64548 3.97280 4.23187 4.45468 4.59712 4.66924 4.76290 4.85216 4.92348 5.18990 5.33337 5.54049 6.10752 6.36012 7.08500 7.78339 8.85110 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.095769 B = 0.014460 C = 0.013164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.299266 B = 1935.856134 C = 2126.439108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.013 4.013 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.364 4.364 8 H 0.049 0.951 9 O -0.345 6.345 10 C 0.074 3.926 11 C 0.042 3.958 12 H 0.099 0.901 13 C -0.166 4.166 14 C 0.018 3.982 15 N -0.672 5.672 16 H 0.275 0.725 17 H 0.040 0.960 18 H 0.033 0.967 19 H 0.092 0.908 20 H 0.094 0.906 21 H 0.091 0.909 22 H 0.103 0.897 23 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.466 -5.369 -0.408 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.206 4.206 3 Si 0.803 3.197 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.442 4.442 8 H 0.067 0.933 9 O -0.261 6.261 10 C -0.003 4.003 11 C -0.069 4.069 12 H 0.117 0.883 13 C -0.204 4.204 14 C -0.111 4.111 15 N -0.301 5.301 16 H 0.084 0.916 17 H 0.058 0.942 18 H 0.051 0.949 19 H 0.111 0.889 20 H 0.113 0.887 21 H 0.109 0.891 22 H 0.121 0.879 23 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.716 -4.274 -0.497 14.375 hybrid contribution -0.758 -0.679 0.090 1.022 sum 12.958 -4.953 -0.406 13.878 Atomic orbital electron populations 1.69792 1.06871 1.28555 1.54667 1.25213 0.95812 1.02035 0.97547 0.85066 0.78344 0.77697 0.78551 1.20012 1.20172 1.19090 1.20391 0.80113 0.94246 1.49499 0.93324 1.85219 1.18518 1.28276 1.94092 1.22628 0.92347 0.86251 0.99082 1.23220 0.91398 0.98397 0.93842 0.88285 1.24320 0.97158 0.96387 1.02548 1.23467 0.94690 0.95004 0.97952 1.65605 1.07908 1.51388 1.05176 0.91578 0.94192 0.94907 0.88904 0.88703 0.89066 0.87923 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.95 13.96 21.61 0.30 -60.65 14 2 C -0.01 -0.79 5.49 84.83 0.47 -0.32 14 3 Si 0.98 49.73 28.62 68.60 1.96 51.70 14 4 H -0.27 -13.56 7.11 99.48 0.71 -12.86 14 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 14 6 H -0.27 -13.49 7.11 99.48 0.71 -12.78 14 7 C -0.36 -22.54 10.35 67.92 0.70 -21.84 14 8 H 0.05 3.18 8.00 -2.91 -0.02 3.16 14 9 O -0.34 -18.94 8.61 -81.98 -0.71 -19.65 14 10 C 0.07 3.13 5.95 71.98 0.43 3.56 14 11 C 0.04 1.39 4.36 42.19 0.18 1.58 14 12 H 0.10 3.48 8.14 -2.38 -0.02 3.46 14 13 C -0.17 -3.74 7.97 30.94 0.25 -3.49 14 14 C 0.02 0.40 8.62 83.58 0.72 1.12 14 15 N -0.67 -21.19 8.67 -519.08 -4.50 -25.69 14 16 H 0.28 16.31 8.31 -92.71 -0.77 15.54 14 17 H 0.04 1.64 8.14 -2.39 -0.02 1.62 14 18 H 0.03 1.35 7.81 -2.38 -0.02 1.33 14 19 H 0.09 1.76 8.14 -2.39 -0.02 1.74 14 20 H 0.09 1.98 8.12 -2.39 -0.02 1.96 14 21 H 0.09 1.56 8.14 -2.39 -0.02 1.54 14 22 H 0.10 2.06 8.14 -2.39 -0.02 2.04 14 23 H 0.34 10.26 8.34 -89.70 -0.75 9.51 14 Total: -1.00 -70.15 205.22 0.25 -69.90 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 0.44 Total: 3.79 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 2.75 Total: -19.40 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -4.20 Total: -86.34 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.71 Total: -19.65 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 1.96 Total: 51.70 kcal Total: -70.15 0.25 -69.90 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260240881.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.048 kcal (2) G-P(sol) polarization free energy of solvation -70.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds