Wall clock time and date at job start Mon Mar 30 2020 01:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86803 * 119.99983 * 2 1 4 4 H 1.48504 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47195 * 300.00186 * 3 2 1 6 6 H 1.48502 * 109.46858 * 60.00246 * 3 2 1 7 7 C 1.38640 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00082 * 179.97438 * 7 2 1 9 9 O 1.34923 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.42899 * 117.00283 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47211 * 179.97438 * 10 9 7 12 12 C 1.53515 * 114.16965 * 185.00043 * 11 10 9 13 13 N 1.47481 * 87.93334 * 220.32733 * 12 11 10 14 14 C 1.47488 * 87.83530 * 27.00963 * 13 12 11 15 15 H 0.96996 * 120.00473 * 359.97438 * 1 2 3 16 16 H 1.08997 * 109.46915 * 59.99607 * 10 9 7 17 17 H 1.09000 * 109.47082 * 299.99520 * 10 9 7 18 18 H 1.09002 * 113.38857 * 318.07878 * 11 10 9 19 19 H 1.09004 * 113.47747 * 105.56637 * 12 11 10 20 20 H 1.08995 * 113.53124 * 335.10698 * 12 11 10 21 21 H 1.00901 * 110.99857 * 138.69928 * 13 12 11 22 22 H 1.08996 * 113.47304 * 87.75121 * 14 13 12 23 23 H 1.08997 * 113.47652 * 218.22256 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3964 1.2126 7 6 2.0091 -1.2006 -0.0005 8 1 3.0891 -1.2006 -0.0010 9 8 1.3345 -2.3691 -0.0016 10 6 2.1128 -3.5676 -0.0027 11 6 1.1808 -4.7809 -0.0031 12 6 1.9045 -6.1294 0.1178 13 7 0.9571 -6.6665 -0.8767 14 6 0.8198 -5.2958 -1.4036 15 1 -0.4851 0.8400 0.0004 16 1 2.7416 -3.5932 0.8873 17 1 2.7415 -3.5917 -0.8927 18 1 0.3271 -4.6711 0.6657 19 1 1.8071 -6.5878 1.1020 20 1 2.9355 -6.1031 -0.2346 21 1 1.4286 -7.2632 -1.5398 22 1 1.5614 -5.0460 -2.1624 23 1 -0.1967 -5.0476 -1.7088 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260301123.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:16 Heat of formation + Delta-G solvation = -4.123875 kcal Electronic energy + Delta-G solvation = -8466.658129 eV Core-core repulsion = 6702.598193 eV Total energy + Delta-G solvation = -1764.059936 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.25899 -35.91298 -31.74055 -28.93068 -25.49551 -24.64489 -22.92866 -19.19512 -17.42792 -16.04976 -15.53562 -14.80742 -14.08620 -13.70629 -12.91322 -12.42803 -12.17921 -11.44122 -11.06092 -10.80037 -10.55269 -10.26076 -10.07667 -9.44048 -9.12712 -8.79433 -7.94963 -5.93627 -3.57605 3.31305 3.34270 3.38960 4.30101 4.50596 4.84180 5.11445 5.39135 5.54994 5.67703 5.93024 6.10281 6.15757 6.17989 6.27558 6.56776 6.62476 6.87138 7.44088 7.49054 8.44279 9.49600 10.19009 11.27587 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.140021 B = 0.011860 C = 0.011407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 199.921597 B = 2360.331883 C = 2453.976888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.022 3.978 3 Si 0.925 3.075 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.362 4.362 8 H 0.062 0.938 9 O -0.294 6.294 10 C 0.082 3.918 11 C -0.104 4.104 12 C 0.005 3.995 13 N -0.632 5.632 14 C 0.008 3.992 15 H 0.258 0.742 16 H 0.025 0.975 17 H 0.022 0.978 18 H 0.106 0.894 19 H 0.081 0.919 20 H 0.062 0.938 21 H 0.312 0.688 22 H 0.064 0.936 23 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -7.633 -1.309 8.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.176 4.176 3 Si 0.752 3.248 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.441 4.441 8 H 0.080 0.920 9 O -0.209 6.209 10 C 0.004 3.996 11 C -0.123 4.123 12 C -0.125 4.125 13 N -0.256 5.256 14 C -0.122 4.122 15 H 0.067 0.933 16 H 0.043 0.957 17 H 0.040 0.960 18 H 0.124 0.876 19 H 0.100 0.900 20 H 0.081 0.919 21 H 0.124 0.876 22 H 0.082 0.918 23 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.439 -7.763 -0.904 8.538 hybrid contribution 1.619 1.030 -0.534 1.992 sum 5.059 -6.732 -1.438 8.543 Atomic orbital electron populations 1.70032 1.05399 1.25786 1.51894 1.24964 0.95667 0.97746 0.99219 0.85899 0.78786 0.82364 0.77734 1.19961 1.20873 1.20851 1.20858 0.90192 0.82795 1.50237 0.92021 1.85644 1.31676 1.10354 1.93260 1.22054 0.92699 0.87033 0.97798 1.22657 0.99694 0.92461 0.97454 1.23598 0.95282 0.95346 0.98286 1.67329 1.36561 1.08910 1.12817 1.23636 1.02623 0.88750 0.97175 0.93261 0.95654 0.96040 0.87615 0.90031 0.91945 0.87612 0.91799 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.30 13.67 55.48 0.76 -27.54 14 2 C 0.02 0.66 5.49 -17.51 -0.10 0.57 14 3 Si 0.92 22.31 29.55 -169.99 -5.02 17.28 14 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 14 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 14 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 14 7 C -0.36 -10.86 9.89 30.88 0.31 -10.55 14 8 H 0.06 1.74 7.77 -52.49 -0.41 1.33 14 9 O -0.29 -8.64 9.78 -16.49 -0.16 -8.80 14 10 C 0.08 1.85 5.93 37.16 0.22 2.07 14 11 C -0.10 -1.96 4.34 -90.09 -0.39 -2.35 14 12 C 0.01 0.08 8.20 -7.54 -0.06 0.02 14 13 N -0.63 -9.47 8.71 -122.62 -1.07 -10.54 14 14 C 0.01 0.14 8.19 -7.53 -0.06 0.08 14 15 H 0.26 7.60 8.31 -40.82 -0.34 7.26 14 16 H 0.03 0.55 8.14 -51.93 -0.42 0.13 14 17 H 0.02 0.46 7.81 -51.93 -0.41 0.06 14 18 H 0.11 2.16 8.14 -51.93 -0.42 1.73 14 19 H 0.08 1.13 8.14 -51.93 -0.42 0.70 14 20 H 0.06 0.83 8.10 -51.93 -0.42 0.41 14 21 H 0.31 3.86 8.91 -39.29 -0.35 3.51 14 22 H 0.06 1.02 7.87 -51.93 -0.41 0.61 14 23 H 0.08 1.50 8.14 -51.93 -0.42 1.08 14 LS Contribution 206.43 15.07 3.11 3.11 Total: -1.00 -33.06 206.43 -5.29 -38.35 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -2.82 Total: -1.69 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.09 Total: -10.18 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.31 Total: -38.07 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.16 Total: -8.80 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -33.06 -5.29 -38.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260301123.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.222 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds