Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09007 * 109.46773 * 55.00766 * 10 9 7 12 12 F 1.39900 * 109.47470 * 295.00594 * 10 9 7 13 13 C 1.52995 * 109.47161 * 175.00101 * 10 9 7 14 14 C 1.52999 * 117.49740 * 133.74948 * 13 10 9 15 15 C 1.53001 * 117.49756 * 65.08982 * 13 10 9 16 16 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 17 17 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 18 18 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 19 19 H 1.09005 * 115.55487 * 279.42056 * 13 10 9 20 20 H 1.09001 * 117.50107 * 0.02562 * 14 13 10 21 21 H 1.09001 * 117.50067 * 145.01796 * 14 13 10 22 22 H 1.08996 * 117.50002 * 214.97145 * 15 13 10 23 23 H 1.09000 * 117.49994 * 359.97438 * 15 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 1 3.5835 -3.1738 -0.8519 12 9 3.6565 -3.2644 1.1849 13 6 5.5459 -2.6380 -0.1429 14 6 6.3356 -3.5502 0.7979 15 6 6.3552 -2.0339 1.0065 16 1 -0.4850 0.8400 -0.0004 17 1 3.8713 -0.6783 -0.8962 18 1 3.8786 -0.6819 0.8837 19 1 5.9303 -2.5039 -1.1540 20 1 5.7692 -4.1496 1.5107 21 1 7.2397 -4.0161 0.4058 22 1 7.2722 -1.5028 0.7516 23 1 5.8017 -1.6350 1.8565 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260772622.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = -59.878307 kcal Electronic energy + Delta-G solvation = -8656.071928 eV Core-core repulsion = 6804.248425 eV Total energy + Delta-G solvation = -1851.823503 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.080 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -48.44082 -38.03230 -35.25461 -32.52959 -27.57292 -23.78115 -22.90543 -20.94983 -19.07459 -17.52387 -16.73601 -16.57747 -15.47838 -15.15935 -14.50585 -14.05849 -13.37564 -13.25412 -12.55686 -12.40614 -12.31667 -11.82054 -11.69766 -11.44894 -11.03600 -10.80980 -10.68742 -8.32391 -6.38495 1.34868 1.38007 1.50007 2.34428 2.86149 3.02111 3.68455 3.89339 4.01213 4.12249 4.39521 4.52021 4.74321 4.79728 4.99184 5.14838 5.17206 5.30858 5.51108 5.60568 6.18535 6.67751 7.25473 8.84759 Molecular weight = 158.08amu Principal moments of inertia in cm(-1) A = 0.078625 B = 0.016727 C = 0.014593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.033662 B = 1673.577626 C = 1918.263018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.259 1.259 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.540 4.540 8 H 0.027 0.973 9 C -0.029 4.029 10 C 0.125 3.875 11 H 0.076 0.924 12 F -0.231 7.231 13 C -0.193 4.193 14 C -0.164 4.164 15 C -0.175 4.175 16 H 0.268 0.732 17 H 0.047 0.953 18 H 0.026 0.974 19 H 0.138 0.862 20 H 0.085 0.915 21 H 0.123 0.877 22 H 0.120 0.880 23 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.595 -1.701 -0.545 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.578 4.578 8 H 0.045 0.955 9 C -0.066 4.066 10 C 0.089 3.911 11 H 0.094 0.906 12 F -0.212 7.212 13 C -0.211 4.211 14 C -0.201 4.201 15 C -0.212 4.212 16 H 0.077 0.923 17 H 0.065 0.935 18 H 0.045 0.955 19 H 0.156 0.844 20 H 0.103 0.897 21 H 0.141 0.859 22 H 0.138 0.862 23 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.436 -1.619 -0.512 13.542 hybrid contribution -0.572 0.537 0.133 0.796 sum 12.863 -1.082 -0.379 12.914 Atomic orbital electron populations 1.70078 1.08451 1.28371 1.52184 1.26061 0.95695 1.03743 0.93730 0.85582 0.79394 0.77618 0.79616 1.18335 1.20938 1.16936 1.21388 0.91857 0.93300 1.51246 0.95465 1.20036 0.94422 0.93789 0.98375 1.21089 0.93499 0.93842 0.82653 0.90622 1.92678 1.93366 1.84371 1.50817 1.23010 0.91557 1.08197 0.98384 1.23037 1.02115 0.93057 1.01913 1.22993 1.02176 0.96537 0.99467 0.92327 0.93503 0.95520 0.84388 0.89653 0.85897 0.86190 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.86 13.96 21.45 0.30 -60.56 14 2 C 0.00 0.27 5.47 84.65 0.46 0.74 14 3 Si 0.96 44.35 27.46 68.60 1.88 46.24 14 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 14 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 14 6 H -0.25 -10.59 6.55 99.48 0.65 -9.94 14 7 C -0.54 -32.28 9.51 25.60 0.24 -32.04 14 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 14 9 C -0.03 -1.37 3.65 29.85 0.11 -1.26 14 10 C 0.13 5.16 3.67 30.59 0.11 5.27 14 11 H 0.08 3.09 8.14 -2.38 -0.02 3.07 14 12 F -0.23 -10.64 15.50 44.97 0.70 -9.94 14 13 C -0.19 -5.90 5.79 -10.79 -0.06 -5.96 14 14 C -0.16 -4.30 9.93 30.62 0.30 -4.00 14 15 C -0.17 -4.87 9.81 30.62 0.30 -4.57 14 16 H 0.27 15.87 8.31 -92.71 -0.77 15.10 14 17 H 0.05 2.06 7.56 -2.39 -0.02 2.04 14 18 H 0.03 1.27 6.89 -2.38 -0.02 1.26 14 19 H 0.14 3.48 8.14 -2.38 -0.02 3.46 14 20 H 0.08 2.49 7.29 -2.39 -0.02 2.47 14 21 H 0.12 2.40 8.14 -2.39 -0.02 2.38 14 22 H 0.12 2.62 8.14 -2.39 -0.02 2.60 14 23 H 0.08 2.46 7.99 -2.39 -0.02 2.44 14 Total: -1.00 -67.67 204.10 5.47 -62.20 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.12 Total: 3.87 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 1.47 Total: -41.81 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.30 Total: -60.56 kcal Atomic # 9 Polarization: -10.64 SS G_CDS: 0.70 Total: -9.94 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.24 kcal Total: -67.67 5.47 -62.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260772622.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.317 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds