Wall clock time and date at job start Mon Mar 30 2020 01:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46901 * 111.00334 * 2 1 4 4 C 1.50704 * 112.99969 * 299.32720 * 3 2 1 5 5 H 1.07994 * 120.00513 * 113.51552 * 4 3 2 6 6 C 1.37876 * 119.99432 * 293.78868 * 4 3 2 7 7 N 1.31519 * 119.99790 * 189.83500 * 6 4 3 8 8 Si 1.86798 * 120.00286 * 9.83942 * 6 4 3 9 9 H 1.48504 * 109.47089 * 84.77619 * 8 6 4 10 10 H 1.48507 * 109.47137 * 204.77190 * 8 6 4 11 11 H 1.48501 * 109.47131 * 324.77472 * 8 6 4 12 12 C 1.54038 * 113.92341 * 71.25052 * 3 2 1 13 13 O 1.44181 * 85.51397 * 91.66329 * 12 3 2 14 14 C 1.44178 * 93.34085 * 24.19224 * 13 12 3 15 15 H 1.08998 * 109.46984 * 298.50289 * 1 2 3 16 16 H 1.09003 * 109.47643 * 58.50600 * 1 2 3 17 17 H 1.09006 * 109.47439 * 178.50651 * 1 2 3 18 18 H 1.00905 * 111.00400 * 236.04910 * 2 1 3 19 19 H 0.97006 * 119.99988 * 180.02562 * 7 6 4 20 20 H 1.08996 * 113.86346 * 205.80535 * 12 3 2 21 21 H 1.08995 * 113.86589 * 337.51716 * 12 3 2 22 22 H 1.09000 * 113.86528 * 221.65777 * 14 13 12 23 23 H 1.08997 * 113.86528 * 89.95277 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5722 2.1647 -1.2094 5 1 0.9123 3.0120 -1.0957 6 6 2.0229 1.8051 -2.4619 7 7 1.8166 2.6009 -3.4884 8 14 2.9266 0.1878 -2.7007 9 1 1.9409 -0.9063 -2.8923 10 1 3.8011 0.2814 -3.8973 11 1 3.7560 -0.0974 -1.5024 12 6 1.7968 2.1168 1.3333 13 8 3.1002 1.6082 1.6815 14 6 3.5027 1.4590 0.3051 15 1 -0.3633 0.4904 0.9031 16 1 -0.3634 0.5369 -0.8763 17 1 -0.3634 -1.0274 -0.0268 18 1 1.8306 -0.5261 -0.7814 19 1 2.1334 2.3478 -4.3697 20 1 1.7596 3.2013 1.2309 21 1 0.9892 1.7166 1.9462 22 1 4.0480 0.5373 0.1025 23 1 3.9862 2.3427 -0.1112 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260785328.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:44 Heat of formation + Delta-G solvation = -0.750723 kcal Electronic energy + Delta-G solvation = -9102.245087 eV Core-core repulsion = 7338.331422 eV Total energy + Delta-G solvation = -1763.913666 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.42196 -34.33429 -32.24940 -28.38312 -25.82344 -24.36920 -23.65489 -18.85243 -16.96263 -15.68684 -15.46174 -14.53186 -14.15929 -13.44574 -12.73626 -12.44850 -12.28247 -11.61151 -10.95279 -10.89088 -10.64572 -10.24778 -9.59608 -9.16673 -8.75604 -8.71785 -7.34698 -6.30727 -4.33403 3.10270 3.19744 3.24088 4.19690 4.68857 4.92925 5.34934 5.61208 6.13802 6.20891 6.30462 6.42139 6.48255 6.69055 6.76153 7.10513 7.14128 7.35962 7.86356 8.17093 8.39236 8.72889 9.31174 10.81698 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.055173 B = 0.027614 C = 0.026158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.368351 B = 1013.740541 C = 1070.144579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.678 5.678 3 C 0.141 3.859 4 C -0.544 4.544 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.885 5.885 8 Si 0.852 3.148 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.244 1.244 12 C 0.053 3.947 13 O -0.393 6.393 14 C 0.035 3.965 15 H 0.054 0.946 16 H 0.039 0.961 17 H 0.047 0.953 18 H 0.320 0.680 19 H 0.267 0.733 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.271 -3.782 4.039 5.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.311 5.311 3 C 0.051 3.949 4 C -0.583 4.583 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.521 5.521 8 Si 0.680 3.320 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.169 1.169 12 C -0.024 4.024 13 O -0.312 6.312 14 C -0.042 4.042 15 H 0.073 0.927 16 H 0.057 0.943 17 H 0.066 0.934 18 H 0.141 0.859 19 H 0.077 0.923 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.094 0.906 23 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.478 -3.877 4.769 6.165 hybrid contribution 0.122 -0.513 -1.534 1.622 sum 0.600 -4.391 3.235 5.487 Atomic orbital electron populations 1.21943 0.88807 0.99555 1.01093 1.60982 1.07642 1.14943 1.47583 1.21697 0.91721 0.86861 0.94598 1.21421 1.31625 1.15071 0.90202 0.90362 1.24961 0.94922 0.96533 0.95969 1.69929 1.45854 1.35872 1.00437 0.87433 0.80942 0.84648 0.78949 1.20065 1.21407 1.16898 1.23878 0.85718 0.97742 0.95048 1.89463 1.30854 1.84910 1.25991 1.24486 0.98309 1.00338 0.81089 0.92703 0.94289 0.93441 0.85941 0.92317 0.90764 0.90892 0.90569 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.35 60.06 0.62 1.34 14 2 N -0.68 -15.24 6.64 -115.19 -0.76 -16.01 14 3 C 0.14 3.35 0.35 -131.67 -0.05 3.30 14 4 C -0.54 -14.70 7.88 -34.44 -0.27 -14.97 14 5 H 0.08 2.30 8.06 -52.49 -0.42 1.88 14 6 C 0.08 2.23 5.45 -17.82 -0.10 2.13 14 7 N -0.88 -26.02 13.96 55.43 0.77 -25.25 14 8 Si 0.85 20.15 24.30 -169.99 -4.13 16.02 14 9 H -0.27 -6.36 7.10 56.52 0.40 -5.96 14 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 14 11 H -0.24 -5.44 4.62 56.52 0.26 -5.18 14 12 C 0.05 1.16 8.32 37.61 0.31 1.47 14 13 O -0.39 -9.04 12.45 -35.23 -0.44 -9.47 14 14 C 0.04 0.81 7.03 37.61 0.26 1.07 14 15 H 0.05 1.01 7.08 -51.93 -0.37 0.65 14 16 H 0.04 0.85 7.26 -51.93 -0.38 0.47 14 17 H 0.05 0.82 8.14 -51.93 -0.42 0.40 14 18 H 0.32 7.26 4.63 -39.29 -0.18 7.08 14 19 H 0.27 7.38 8.31 -40.82 -0.34 7.04 14 20 H 0.07 1.55 8.09 -51.93 -0.42 1.13 14 21 H 0.07 1.45 7.16 -51.93 -0.37 1.08 14 22 H 0.08 1.69 6.35 -51.93 -0.33 1.36 14 23 H 0.08 1.77 8.09 -51.93 -0.42 1.35 14 LS Contribution 188.72 15.07 2.84 2.84 Total: -1.00 -29.15 188.72 -3.52 -32.67 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -2.59 Total: 4.85 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 0.78 Total: -5.66 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.01 Total: -41.25 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.44 Total: -9.47 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.13 Total: 16.02 kcal Total LS contribution 2.84 Total: 2.84 kcal Total: -29.15 -3.52 -32.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260785328.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.919 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds