Wall clock time and date at job start Mon Mar 30 2020 01:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46901 * 111.00334 * 2 1 4 4 C 1.50704 * 112.99969 * 299.32720 * 3 2 1 5 5 H 1.07994 * 120.00513 * 113.51552 * 4 3 2 6 6 C 1.37876 * 119.99432 * 293.78868 * 4 3 2 7 7 N 1.31519 * 119.99790 * 189.83500 * 6 4 3 8 8 Si 1.86798 * 120.00286 * 9.83942 * 6 4 3 9 9 H 1.48504 * 109.47089 * 84.77619 * 8 6 4 10 10 H 1.48507 * 109.47137 * 204.77190 * 8 6 4 11 11 H 1.48501 * 109.47131 * 324.77472 * 8 6 4 12 12 C 1.54038 * 113.92341 * 71.25052 * 3 2 1 13 13 O 1.44181 * 85.51397 * 91.66329 * 12 3 2 14 14 C 1.44178 * 93.34085 * 24.19224 * 13 12 3 15 15 H 1.08998 * 109.46984 * 298.50289 * 1 2 3 16 16 H 1.09003 * 109.47643 * 58.50600 * 1 2 3 17 17 H 1.09006 * 109.47439 * 178.50651 * 1 2 3 18 18 H 1.00905 * 111.00400 * 236.04910 * 2 1 3 19 19 H 0.97006 * 119.99988 * 180.02562 * 7 6 4 20 20 H 1.08996 * 113.86346 * 205.80535 * 12 3 2 21 21 H 1.08995 * 113.86589 * 337.51716 * 12 3 2 22 22 H 1.09000 * 113.86528 * 221.65777 * 14 13 12 23 23 H 1.08997 * 113.86528 * 89.95277 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5722 2.1647 -1.2094 5 1 0.9123 3.0120 -1.0957 6 6 2.0229 1.8051 -2.4619 7 7 1.8166 2.6009 -3.4884 8 14 2.9266 0.1878 -2.7007 9 1 1.9409 -0.9063 -2.8923 10 1 3.8011 0.2814 -3.8973 11 1 3.7560 -0.0974 -1.5024 12 6 1.7968 2.1168 1.3333 13 8 3.1002 1.6082 1.6815 14 6 3.5027 1.4590 0.3051 15 1 -0.3633 0.4904 0.9031 16 1 -0.3634 0.5369 -0.8763 17 1 -0.3634 -1.0274 -0.0268 18 1 1.8306 -0.5261 -0.7814 19 1 2.1334 2.3478 -4.3697 20 1 1.7596 3.2013 1.2309 21 1 0.9892 1.7166 1.9462 22 1 4.0480 0.5373 0.1025 23 1 3.9862 2.3427 -0.1112 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260785328.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:44 Heat of formation + Delta-G solvation = -24.762491 kcal Electronic energy + Delta-G solvation = -9103.286316 eV Core-core repulsion = 7338.331422 eV Total energy + Delta-G solvation = -1764.954894 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.22918 -36.15159 -34.29596 -30.25288 -27.58641 -26.38209 -25.35900 -20.74573 -18.93724 -17.55254 -17.25327 -16.39758 -15.95725 -15.27868 -14.72611 -14.24936 -14.01353 -13.35758 -12.75362 -12.66074 -12.55976 -12.03763 -11.44667 -11.08516 -10.81532 -10.49699 -9.18727 -8.42553 -6.49983 1.24592 1.29719 1.37818 2.21666 2.87800 2.91302 3.57346 3.78540 4.49112 4.55430 4.59364 4.70739 4.81019 4.98411 5.14253 5.26769 5.35899 5.40689 5.91045 6.36278 6.43542 6.56034 7.18247 8.73210 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.055173 B = 0.027614 C = 0.026158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.368351 B = 1013.740541 C = 1070.144579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.675 5.675 3 C 0.133 3.867 4 C -0.543 4.543 5 H 0.038 0.962 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.910 3.090 9 H -0.263 1.263 10 H -0.290 1.290 11 H -0.220 1.220 12 C 0.058 3.942 13 O -0.397 6.397 14 C 0.037 3.963 15 H 0.068 0.932 16 H 0.013 0.987 17 H 0.078 0.922 18 H 0.319 0.681 19 H 0.268 0.732 20 H 0.076 0.924 21 H 0.094 0.906 22 H 0.089 0.911 23 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 -5.397 5.000 7.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.308 5.308 3 C 0.042 3.958 4 C -0.583 4.583 5 H 0.057 0.943 6 C -0.172 4.172 7 N -0.571 5.571 8 Si 0.735 3.265 9 H -0.189 1.189 10 H -0.217 1.217 11 H -0.144 1.144 12 C -0.019 4.019 13 O -0.316 6.316 14 C -0.041 4.041 15 H 0.087 0.913 16 H 0.032 0.968 17 H 0.097 0.903 18 H 0.139 0.861 19 H 0.078 0.922 20 H 0.095 0.905 21 H 0.112 0.888 22 H 0.107 0.893 23 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.909 -5.498 5.759 8.014 hybrid contribution -0.093 0.064 -1.803 1.807 sum 0.815 -5.434 3.956 6.771 Atomic orbital electron populations 1.22051 0.87394 1.01430 1.00607 1.61028 1.08966 1.13591 1.47262 1.21765 0.92629 0.87486 0.93891 1.21561 1.30556 1.14223 0.91919 0.94326 1.25757 0.95967 0.99931 0.95518 1.70066 1.47866 1.38110 1.01095 0.86482 0.80154 0.80318 0.79537 1.18888 1.21702 1.14386 1.23951 0.85956 0.97904 0.94135 1.89459 1.31286 1.85005 1.25849 1.24483 0.97640 1.00896 0.81056 0.91301 0.96846 0.90296 0.86073 0.92246 0.90548 0.88753 0.89328 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.29 10.35 127.69 1.32 2.61 14 2 N -0.68 -28.34 6.64 -529.39 -3.52 -31.85 14 3 C 0.13 6.04 0.35 3.48 0.00 6.05 14 4 C -0.54 -29.40 7.88 25.60 0.20 -29.19 14 5 H 0.04 2.33 8.06 -2.91 -0.02 2.31 14 6 C 0.03 1.57 5.45 84.65 0.46 2.03 14 7 N -0.93 -55.81 13.96 21.45 0.30 -55.51 14 8 Si 0.91 40.53 24.30 68.60 1.67 42.20 14 9 H -0.26 -11.22 7.10 99.48 0.71 -10.52 14 10 H -0.29 -13.02 7.11 99.48 0.71 -12.31 14 11 H -0.22 -8.87 4.62 99.48 0.46 -8.41 14 12 C 0.06 2.37 8.32 72.28 0.60 2.97 14 13 O -0.40 -17.14 12.45 -148.98 -1.86 -19.00 14 14 C 0.04 1.58 7.03 72.27 0.51 2.09 14 15 H 0.07 2.35 7.08 -2.39 -0.02 2.33 14 16 H 0.01 0.55 7.26 -2.39 -0.02 0.53 14 17 H 0.08 2.44 8.14 -2.38 -0.02 2.42 14 18 H 0.32 13.38 4.63 -89.69 -0.42 12.96 14 19 H 0.27 15.07 8.31 -92.70 -0.77 14.30 14 20 H 0.08 3.10 8.09 -2.39 -0.02 3.08 14 21 H 0.09 3.47 7.16 -2.39 -0.02 3.45 14 22 H 0.09 3.61 6.35 -2.39 -0.02 3.59 14 23 H 0.08 3.32 8.09 -2.39 -0.02 3.30 14 Total: -1.00 -60.78 188.72 0.23 -60.55 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.54 Total: 17.05 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 3.10 Total: -13.44 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -3.22 Total: -87.36 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -1.86 Total: -19.00 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.67 Total: 42.20 kcal Total: -60.78 0.23 -60.55 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260785328.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.787 kcal (2) G-P(sol) polarization free energy of solvation -60.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds