Wall clock time and date at job start Mon Mar 30 2020 01:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46976 * 2 1 4 4 C 1.50693 * 109.47022 * 240.00110 * 2 1 3 5 5 H 1.08000 * 120.00096 * 275.01592 * 4 2 1 6 6 C 1.37874 * 120.00532 * 95.02507 * 4 2 1 7 7 N 1.31508 * 120.00627 * 184.88812 * 6 4 2 8 8 Si 1.86807 * 119.99498 * 4.88301 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.78572 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.78198 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.78511 * 8 6 4 12 12 C 1.53003 * 109.47038 * 119.99860 * 2 1 3 13 13 F 1.39897 * 115.54697 * 159.41977 * 12 2 1 14 14 C 1.52999 * 117.49644 * 13.74773 * 12 2 1 15 15 C 1.53003 * 117.49689 * 305.08952 * 12 2 1 16 16 H 1.09003 * 109.47021 * 54.77296 * 1 2 3 17 17 H 1.08998 * 109.47292 * 294.76959 * 1 2 3 18 18 H 1.09001 * 109.46917 * 174.76757 * 1 2 3 19 19 H 0.96998 * 120.00512 * 180.02562 * 7 6 4 20 20 H 1.08999 * 117.50706 * 0.02562 * 14 12 2 21 21 H 1.09000 * 117.49801 * 145.02256 * 14 12 2 22 22 H 1.08997 * 117.49430 * 214.97892 * 15 12 2 23 23 H 1.08997 * 117.50145 * 359.97438 * 15 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1352 -1.7854 -1.2291 6 6 2.3607 0.0121 -2.3579 7 7 2.7069 -0.6130 -3.4619 8 14 2.3138 1.8791 -2.3172 9 1 3.5987 2.3950 -1.7802 10 1 2.1079 2.3992 -3.6929 11 1 1.1977 2.3274 -1.4463 12 6 2.0400 -0.7212 1.2493 13 9 3.3552 -1.1930 1.1790 14 6 1.0326 -1.5532 2.0454 15 6 1.5399 -0.2225 2.6065 16 1 -0.3633 0.5928 -0.8395 17 1 -0.3634 0.4305 0.9331 18 1 -0.3633 -1.0234 -0.0937 19 1 2.9383 -0.1048 -4.2549 20 1 0.0066 -1.5872 1.6790 21 1 1.3946 -2.4680 2.5147 22 1 2.2355 -0.2623 3.4447 23 1 0.8480 0.6197 2.6095 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260849629.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:55 Heat of formation + Delta-G solvation = -52.112369 kcal Electronic energy + Delta-G solvation = -8873.603836 eV Core-core repulsion = 7022.117089 eV Total energy + Delta-G solvation = -1851.486746 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.080 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -48.27653 -38.43081 -34.98504 -32.43040 -27.27440 -24.50521 -23.39901 -20.36108 -19.05005 -17.57797 -16.47892 -16.04373 -15.42396 -14.71041 -14.52566 -14.17315 -13.50546 -13.02097 -12.72456 -12.62589 -12.31708 -11.99378 -11.82177 -11.42579 -10.89463 -10.76014 -10.24540 -8.29633 -6.34120 1.34141 1.36505 1.46639 2.34364 2.80412 3.04890 3.39251 3.94165 4.00665 4.21791 4.60510 4.67646 4.84818 4.92495 5.05227 5.21951 5.26545 5.32959 5.66429 5.68586 6.27028 6.71493 7.30170 8.88095 Molecular weight = 158.08amu Principal moments of inertia in cm(-1) A = 0.066549 B = 0.020892 C = 0.019509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.644204 B = 1339.883260 C = 1434.858303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.022 3.978 3 H 0.042 0.958 4 C -0.513 4.513 5 H 0.024 0.976 6 C 0.006 3.994 7 N -0.952 5.952 8 Si 0.945 3.055 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.234 1.234 12 C 0.015 3.985 13 F -0.206 7.206 14 C -0.184 4.184 15 C -0.169 4.169 16 H 0.043 0.957 17 H 0.071 0.929 18 H 0.051 0.949 19 H 0.266 0.734 20 H 0.123 0.877 21 H 0.101 0.899 22 H 0.111 0.889 23 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 4.299 10.470 12.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.003 3.997 3 H 0.060 0.940 4 C -0.551 4.551 5 H 0.042 0.958 6 C -0.190 4.190 7 N -0.592 5.592 8 Si 0.768 3.232 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.157 1.157 12 C -0.003 4.003 13 F -0.187 7.187 14 C -0.221 4.221 15 C -0.206 4.206 16 H 0.062 0.938 17 H 0.090 0.910 18 H 0.070 0.930 19 H 0.075 0.925 20 H 0.141 0.859 21 H 0.119 0.881 22 H 0.129 0.871 23 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.925 4.300 10.288 12.190 hybrid contribution 0.661 0.175 -0.648 0.943 sum -4.264 4.476 9.640 11.452 Atomic orbital electron populations 1.21961 0.94839 1.01279 1.00887 1.19068 0.95093 0.95216 0.90352 0.93981 1.21084 1.43234 0.93686 0.97080 0.95761 1.26021 0.94183 1.04149 0.94649 1.70063 1.48317 1.38134 1.02714 0.85780 0.80214 0.79395 0.77850 1.19715 1.21083 1.15661 1.21706 0.78417 1.04558 0.95618 1.92698 1.38750 1.89722 1.97484 1.23785 1.00347 0.95900 1.02085 1.23774 1.03553 0.98575 0.94711 0.93805 0.90999 0.93011 0.92518 0.85893 0.88081 0.87108 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 7.80 71.98 0.56 -4.45 14 2 C 0.02 1.01 2.30 -11.54 -0.03 0.98 14 3 H 0.04 1.92 5.29 -2.39 -0.01 1.91 14 4 C -0.51 -30.20 8.41 25.60 0.22 -29.99 14 5 H 0.02 1.62 8.06 -2.91 -0.02 1.59 14 6 C 0.01 0.38 5.47 84.65 0.46 0.85 14 7 N -0.95 -61.12 13.96 21.44 0.30 -60.82 14 8 Si 0.94 44.41 26.99 68.60 1.85 46.26 14 9 H -0.27 -12.56 7.11 99.48 0.71 -11.85 14 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 14 11 H -0.23 -9.73 6.82 99.48 0.68 -9.05 14 12 C 0.02 0.64 3.39 -10.79 -0.04 0.60 14 13 F -0.21 -10.14 16.99 44.97 0.76 -9.37 14 14 C -0.18 -5.88 9.63 30.62 0.29 -5.58 14 15 C -0.17 -4.93 9.83 30.62 0.30 -4.63 14 16 H 0.04 1.69 8.14 -2.39 -0.02 1.67 14 17 H 0.07 2.10 6.61 -2.39 -0.02 2.08 14 18 H 0.05 1.95 7.10 -2.39 -0.02 1.93 14 19 H 0.27 15.90 8.31 -92.71 -0.77 15.13 14 20 H 0.12 3.56 5.96 -2.39 -0.01 3.55 14 21 H 0.10 3.01 8.14 -2.39 -0.02 2.99 14 22 H 0.11 2.85 8.14 -2.39 -0.02 2.83 14 23 H 0.13 3.07 7.25 -2.39 -0.02 3.06 14 Total: -1.00 -68.58 198.82 5.85 -62.73 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 1.16 Total: 3.43 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 1.77 Total: -42.22 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.30 Total: -60.82 kcal Atomic # 9 Polarization: -10.14 SS G_CDS: 0.76 Total: -9.37 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.85 Total: 46.26 kcal Total: -68.58 5.85 -62.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849629.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.615 kcal (2) G-P(sol) polarization free energy of solvation -68.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds