Wall clock time and date at job start Mon Mar 30 2020 01:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31665 * 1 3 3 Si 1.86800 * 119.99806 * 2 1 4 4 H 1.48498 * 109.47034 * 270.00151 * 3 2 1 5 5 H 1.48503 * 109.47187 * 30.00394 * 3 2 1 6 6 H 1.48500 * 109.47009 * 150.00239 * 3 2 1 7 7 C 1.38850 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99944 * 179.97438 * 7 2 1 9 9 N 1.36219 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.47097 * 124.04159 * 179.97438 * 9 7 2 11 11 C 1.54668 * 102.78722 * 180.02562 * 10 9 7 12 12 C 1.51989 * 101.06488 * 359.97438 * 11 10 9 13 13 O 1.21262 * 126.49666 * 179.97438 * 12 11 10 14 14 O 1.20210 * 124.04220 * 0.02752 * 9 7 2 15 15 H 0.97000 * 119.99591 * 359.97438 * 1 2 3 16 16 H 1.09001 * 110.75019 * 61.71230 * 10 9 7 17 17 H 1.09000 * 110.90915 * 298.43350 * 10 9 7 18 18 H 1.09006 * 111.10395 * 242.04801 * 11 10 9 19 19 H 1.09006 * 111.14235 * 117.96236 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3167 0.0000 0.0000 3 14 2.2506 1.6178 0.0000 4 1 2.4980 2.0465 -1.4001 5 1 1.4480 2.6527 0.7001 6 1 3.5482 1.4402 0.7000 7 6 2.0109 -1.2025 -0.0005 8 1 3.0909 -1.2025 -0.0010 9 7 1.3298 -2.3822 -0.0005 10 6 1.9736 -3.7047 -0.0016 11 6 0.7673 -4.6727 -0.0018 12 6 -0.3937 -3.6919 -0.0001 13 8 -1.5738 -3.9711 0.0000 14 8 0.1307 -2.4669 -0.0006 15 1 -0.4849 0.8401 0.0004 16 1 2.5777 -3.8409 0.8954 17 1 2.5791 -3.8419 -0.8976 18 1 0.7599 -5.2907 0.8961 19 1 0.7587 -5.2900 -0.9002 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260854706.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:17 Heat of formation + Delta-G solvation = -6.159403 kcal Electronic energy + Delta-G solvation = -8697.802702 eV Core-core repulsion = 6797.821404 eV Total energy + Delta-G solvation = -1899.981298 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 157.053 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -43.79902 -38.91944 -34.99980 -33.93717 -31.60377 -26.67942 -24.63695 -22.62594 -20.32657 -18.35525 -17.98990 -16.74070 -16.16455 -15.12734 -14.74678 -14.51069 -14.41895 -13.21926 -13.02007 -12.75724 -12.53331 -12.13469 -11.97590 -10.91051 -10.90285 -8.76528 -8.09135 -5.49499 1.26755 1.48072 1.55283 1.62265 2.09735 2.55398 3.21128 3.28553 3.68802 3.80377 4.21202 4.69337 4.86069 4.98259 5.43890 6.14678 6.70874 7.07469 7.67742 8.73527 9.03927 Molecular weight = 157.05amu Principal moments of inertia in cm(-1) A = 0.102735 B = 0.019476 C = 0.016572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.479856 B = 1437.287788 C = 1689.146061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.058 4.058 3 Si 1.003 2.997 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.249 1.249 7 C -0.286 4.286 8 H 0.141 0.859 9 N -0.465 5.465 10 C 0.086 3.914 11 C -0.170 4.170 12 C 0.390 3.610 13 O -0.548 6.548 14 O -0.039 6.039 15 H 0.256 0.744 16 H 0.085 0.915 17 H 0.085 0.915 18 H 0.137 0.863 19 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.680 -5.116 0.030 9.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.255 4.255 3 Si 0.827 3.173 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.173 1.173 7 C -0.409 4.409 8 H 0.158 0.842 9 N -0.231 5.231 10 C -0.035 4.035 11 C -0.208 4.208 12 C 0.233 3.767 13 O -0.443 6.443 14 O -0.045 6.045 15 H 0.065 0.935 16 H 0.103 0.897 17 H 0.103 0.897 18 H 0.155 0.845 19 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.025 -4.849 0.037 8.536 hybrid contribution -0.205 0.718 -0.020 0.747 sum 6.820 -4.131 0.017 7.974 Atomic orbital electron populations 1.70296 1.07580 1.26893 1.52770 1.26229 0.96477 1.02976 0.99827 0.84751 0.77873 0.76593 0.78084 1.20369 1.22207 1.17284 1.19867 0.91648 0.80012 1.49405 0.84211 1.41874 0.89232 1.05624 1.86358 1.22923 0.95875 0.80836 1.03828 1.23266 0.91192 0.98179 1.08148 1.24357 0.90917 0.83089 0.78361 1.90679 1.18851 1.79417 1.55391 1.83411 1.12996 1.32252 1.75830 0.93486 0.89686 0.89657 0.84469 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.32 11.91 21.66 0.26 -58.06 13 2 C -0.06 -3.23 5.50 84.86 0.47 -2.76 13 3 Si 1.00 42.80 29.55 68.60 2.03 44.83 13 4 H -0.28 -11.54 7.11 99.48 0.71 -10.84 13 5 H -0.30 -12.98 7.11 99.48 0.71 -12.27 13 6 H -0.25 -9.50 7.11 99.48 0.71 -8.79 13 7 C -0.29 -14.98 10.17 84.16 0.86 -14.12 13 8 H 0.14 6.33 7.83 -2.91 -0.02 6.31 13 9 N -0.46 -23.59 3.66 -339.91 -1.25 -24.83 13 10 C 0.09 3.00 7.65 86.83 0.66 3.67 13 11 C -0.17 -5.47 7.25 30.83 0.22 -5.24 13 12 C 0.39 19.01 9.01 71.65 0.65 19.66 13 13 O -0.55 -29.90 18.02 20.24 0.36 -29.54 13 14 O -0.04 -2.25 8.30 102.86 0.85 -1.39 13 15 H 0.26 15.37 8.31 -92.71 -0.77 14.60 13 16 H 0.09 2.56 8.14 -2.39 -0.02 2.54 13 17 H 0.09 2.57 8.14 -2.39 -0.02 2.55 13 18 H 0.14 3.54 8.14 -2.38 -0.02 3.52 13 19 H 0.14 3.54 8.14 -2.38 -0.02 3.52 13 Total: -1.00 -73.04 181.05 6.36 -66.68 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: 1.25 Total: 1.13 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 2.86 Total: 1.20 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -0.99 Total: -82.90 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: 1.22 Total: -30.93 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -73.04 6.36 -66.68 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260854706.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.520 kcal (2) G-P(sol) polarization free energy of solvation -73.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds