Wall clock time and date at job start Mon Mar 30 2020 01:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 11 11 F 1.39902 * 109.47254 * 300.00736 * 9 7 2 12 12 C 1.52999 * 109.47522 * 180.02562 * 9 7 2 13 13 C 1.53935 * 113.73527 * 161.73072 * 12 9 7 14 14 N 1.47960 * 86.17904 * 221.92354 * 13 12 9 15 15 C 1.47963 * 90.76588 * 24.68713 * 14 13 12 16 16 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 17 17 H 1.08999 * 112.93337 * 293.43570 * 12 9 7 18 18 H 1.09009 * 113.75851 * 336.23738 * 13 12 9 19 19 H 1.08992 * 113.75969 * 107.60007 * 13 12 9 20 20 H 1.00899 * 110.99580 * 271.79487 * 14 13 12 21 21 H 1.08990 * 113.75722 * 220.99364 * 15 14 13 22 22 H 1.08996 * 113.75340 * 89.62985 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 1 3.8785 -0.6824 0.8776 11 9 3.9731 -0.5317 -1.1547 12 6 4.0215 -2.6365 -0.0183 13 6 5.4878 -2.7733 -0.4666 14 7 5.0383 -3.9533 -1.2379 15 6 3.6612 -3.4155 -1.2962 16 1 -0.4850 0.8400 0.0004 17 1 3.7906 -3.1726 0.9022 18 1 5.8356 -1.9486 -1.0888 19 1 6.1744 -3.0144 0.3447 20 1 5.0764 -4.7895 -0.6743 21 1 2.8886 -4.1698 -1.1475 22 1 3.4748 -2.7787 -2.1609 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260858759.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:17 Heat of formation + Delta-G solvation = -16.137711 kcal Electronic energy + Delta-G solvation = -9001.373737 eV Core-core repulsion = 7086.021059 eV Total energy + Delta-G solvation = -1915.352679 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 159.075 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -46.25462 -38.59141 -32.77581 -29.62258 -25.74297 -25.16610 -21.71032 -19.05117 -17.03581 -16.16403 -15.22951 -14.57072 -14.30748 -13.04632 -12.77944 -12.30589 -11.97529 -11.85219 -11.66286 -10.96815 -10.58080 -10.18667 -9.98758 -9.25918 -8.95180 -8.69086 -7.93586 -6.21309 -4.32956 3.28286 3.38346 3.52764 4.38676 4.54737 5.09474 5.15907 5.37859 5.87788 5.99104 6.09937 6.23867 6.32674 6.41189 6.52792 6.83643 7.27229 7.42954 7.75647 8.29948 8.77981 9.39385 10.89886 Molecular weight = 159.08amu Principal moments of inertia in cm(-1) A = 0.087701 B = 0.019696 C = 0.017291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.188566 B = 1421.261553 C = 1618.993389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.083 3.917 3 Si 0.868 3.132 4 H -0.281 1.281 5 H -0.239 1.239 6 H -0.287 1.287 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.187 3.813 10 H 0.035 0.965 11 F -0.237 7.237 12 C -0.164 4.164 13 C 0.013 3.987 14 N -0.668 5.668 15 C 0.037 3.963 16 H 0.267 0.733 17 H 0.092 0.908 18 H 0.099 0.901 19 H 0.062 0.938 20 H 0.326 0.674 21 H 0.066 0.934 22 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.651 -3.063 0.642 8.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.122 4.122 3 Si 0.694 3.306 4 H -0.207 1.207 5 H -0.161 1.161 6 H -0.213 1.213 7 C -0.593 4.593 8 H 0.100 0.900 9 C 0.150 3.850 10 H 0.052 0.948 11 F -0.218 7.218 12 C -0.184 4.184 13 C -0.117 4.117 14 N -0.293 5.293 15 C -0.092 4.092 16 H 0.077 0.923 17 H 0.110 0.890 18 H 0.117 0.883 19 H 0.081 0.919 20 H 0.139 0.861 21 H 0.084 0.916 22 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.838 -2.887 -0.196 8.355 hybrid contribution -0.248 0.855 1.070 1.392 sum 7.590 -2.032 0.874 7.906 Atomic orbital electron populations 1.69915 1.06465 1.27518 1.48467 1.25005 0.94823 0.99647 0.92710 0.87119 0.82247 0.82745 0.78519 1.20688 1.16139 1.21299 1.21221 0.88356 0.95369 1.54337 0.90037 1.19340 0.95608 0.87835 0.82238 0.94776 1.92697 1.90814 1.82568 1.55763 1.24563 0.94956 0.99404 0.99481 1.23743 0.96144 0.95123 0.96663 1.65121 1.14601 1.03940 1.45675 1.23505 0.89989 0.97406 0.98311 0.92332 0.89014 0.88269 0.91905 0.86052 0.91564 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.96 55.43 0.77 -26.18 14 2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 14 3 Si 0.87 21.66 27.07 -169.99 -4.60 17.05 14 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 14 5 H -0.24 -5.87 5.48 56.52 0.31 -5.56 14 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 14 7 C -0.56 -15.52 9.08 -34.44 -0.31 -15.83 14 8 H 0.08 2.42 7.95 -52.49 -0.42 2.00 14 9 C 0.19 4.45 2.71 -27.88 -0.08 4.37 14 10 H 0.03 0.80 7.57 -51.93 -0.39 0.41 14 11 F -0.24 -5.90 12.61 2.25 0.03 -5.87 14 12 C -0.16 -3.22 3.84 -89.69 -0.34 -3.57 14 13 C 0.01 0.23 8.35 -2.77 -0.02 0.20 14 14 N -0.67 -11.27 8.56 -117.03 -1.00 -12.27 14 15 C 0.04 0.71 7.95 -2.76 -0.02 0.69 14 16 H 0.27 7.58 8.31 -40.82 -0.34 7.24 14 17 H 0.09 1.69 8.14 -51.93 -0.42 1.27 14 18 H 0.10 1.81 7.27 -51.92 -0.38 1.43 14 19 H 0.06 0.91 8.14 -51.93 -0.42 0.48 14 20 H 0.33 4.68 8.89 -39.29 -0.35 4.33 14 21 H 0.07 1.19 8.14 -51.93 -0.42 0.76 14 22 H 0.10 2.16 7.73 -51.93 -0.40 1.76 14 LS Contribution 191.42 15.07 2.88 2.88 Total: -1.00 -30.01 191.42 -5.22 -35.23 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -2.43 Total: 0.99 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.87 Total: -11.84 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.23 Total: -38.45 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.03 Total: -5.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.60 Total: 17.05 kcal Total LS contribution 2.88 Total: 2.88 kcal Total: -30.01 -5.22 -35.23 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260858759.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.094 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds