Wall clock time and date at job start Mon Mar 30 2020 01:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 11 11 F 1.39902 * 109.47254 * 300.00736 * 9 7 2 12 12 C 1.52999 * 109.47522 * 180.02562 * 9 7 2 13 13 C 1.53935 * 113.73527 * 161.73072 * 12 9 7 14 14 N 1.47960 * 86.17904 * 221.92354 * 13 12 9 15 15 C 1.47963 * 90.76588 * 24.68713 * 14 13 12 16 16 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 17 17 H 1.08999 * 112.93337 * 293.43570 * 12 9 7 18 18 H 1.09009 * 113.75851 * 336.23738 * 13 12 9 19 19 H 1.08992 * 113.75969 * 107.60007 * 13 12 9 20 20 H 1.00899 * 110.99580 * 271.79487 * 14 13 12 21 21 H 1.08990 * 113.75722 * 220.99364 * 15 14 13 22 22 H 1.08996 * 113.75340 * 89.62985 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 1 3.8785 -0.6824 0.8776 11 9 3.9731 -0.5317 -1.1547 12 6 4.0215 -2.6365 -0.0183 13 6 5.4878 -2.7733 -0.4666 14 7 5.0383 -3.9533 -1.2379 15 6 3.6612 -3.4155 -1.2962 16 1 -0.4850 0.8400 0.0004 17 1 3.7906 -3.1726 0.9022 18 1 5.8356 -1.9486 -1.0888 19 1 6.1744 -3.0144 0.3447 20 1 5.0764 -4.7895 -0.6743 21 1 2.8886 -4.1698 -1.1475 22 1 3.4748 -2.7787 -2.1609 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260858759.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:17 Heat of formation + Delta-G solvation = -39.021834 kcal Electronic energy + Delta-G solvation = -9002.366068 eV Core-core repulsion = 7086.021059 eV Total energy + Delta-G solvation = -1916.345009 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 159.075 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -48.20246 -40.05379 -34.94362 -31.49785 -27.44155 -26.74014 -23.52895 -20.64465 -19.17182 -17.67199 -17.08069 -16.40991 -16.18991 -14.87906 -14.70466 -14.09088 -13.55993 -13.44324 -13.30554 -12.90809 -12.49169 -11.89231 -11.77463 -11.11432 -10.94875 -10.80669 -9.38077 -8.42310 -6.58348 1.31752 1.37991 1.55047 2.30838 2.95032 3.14896 3.58665 3.90434 4.25310 4.47714 4.61268 4.74317 4.77121 4.86502 5.05427 5.22385 5.34357 5.52826 6.11148 6.49474 6.53492 7.17507 8.72257 Molecular weight = 159.08amu Principal moments of inertia in cm(-1) A = 0.087701 B = 0.019696 C = 0.017291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.188566 B = 1421.261553 C = 1618.993389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.232 1.232 6 H -0.287 1.287 7 C -0.560 4.560 8 H 0.050 0.950 9 C 0.183 3.817 10 H 0.046 0.954 11 F -0.242 7.242 12 C -0.168 4.168 13 C 0.026 3.974 14 N -0.662 5.662 15 C 0.034 3.966 16 H 0.270 0.730 17 H 0.106 0.894 18 H 0.088 0.912 19 H 0.098 0.902 20 H 0.345 0.655 21 H 0.072 0.928 22 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.483 -3.016 1.120 10.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.754 3.246 4 H -0.191 1.191 5 H -0.154 1.154 6 H -0.213 1.213 7 C -0.598 4.598 8 H 0.068 0.932 9 C 0.146 3.854 10 H 0.064 0.936 11 F -0.224 7.224 12 C -0.188 4.188 13 C -0.104 4.104 14 N -0.289 5.289 15 C -0.096 4.096 16 H 0.079 0.921 17 H 0.124 0.876 18 H 0.106 0.894 19 H 0.117 0.883 20 H 0.160 0.840 21 H 0.090 0.910 22 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.687 -2.862 0.291 10.106 hybrid contribution -0.857 0.756 0.913 1.463 sum 8.830 -2.106 1.205 9.157 Atomic orbital electron populations 1.70037 1.08156 1.28591 1.50290 1.25906 0.95587 1.03465 0.92557 0.86122 0.80954 0.78283 0.79288 1.19077 1.15429 1.21266 1.21526 0.90866 0.94126 1.53284 0.93166 1.19388 0.93023 0.90760 0.82210 0.93582 1.92672 1.90601 1.82936 1.56163 1.24654 0.97145 0.96639 1.00332 1.23696 0.94812 0.94743 0.97157 1.65035 1.12707 1.04714 1.46477 1.23376 0.91611 0.97489 0.97141 0.92094 0.87601 0.89395 0.88346 0.83983 0.90951 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.96 21.45 0.30 -57.21 14 2 C 0.03 1.46 5.47 84.65 0.46 1.92 14 3 Si 0.93 44.20 27.07 68.60 1.86 46.06 14 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 14 5 H -0.23 -10.67 5.48 99.48 0.55 -10.12 14 6 H -0.29 -13.50 7.11 99.48 0.71 -12.80 14 7 C -0.56 -31.44 9.08 25.60 0.23 -31.21 14 8 H 0.05 3.05 7.95 -2.91 -0.02 3.03 14 9 C 0.18 8.45 2.71 29.85 0.08 8.53 14 10 H 0.05 2.04 7.57 -2.39 -0.02 2.02 14 11 F -0.24 -11.68 12.61 44.97 0.57 -11.11 14 12 C -0.17 -6.24 3.84 -10.15 -0.04 -6.28 14 13 C 0.03 0.79 8.35 86.41 0.72 1.51 14 14 N -0.66 -20.49 8.56 -524.19 -4.48 -24.97 14 15 C 0.03 1.25 7.95 86.41 0.69 1.94 14 16 H 0.27 15.54 8.31 -92.71 -0.77 14.77 14 17 H 0.11 3.62 8.14 -2.39 -0.02 3.60 14 18 H 0.09 2.95 7.27 -2.38 -0.02 2.93 14 19 H 0.10 2.37 8.14 -2.39 -0.02 2.35 14 20 H 0.34 8.68 8.89 -89.69 -0.80 7.89 14 21 H 0.07 2.54 8.14 -2.39 -0.02 2.52 14 22 H 0.08 3.21 7.73 -2.39 -0.02 3.19 14 Total: -1.00 -63.26 191.42 0.64 -62.62 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.26 Total: 8.20 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 2.15 Total: -23.59 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -4.19 Total: -82.18 kcal Atomic # 9 Polarization: -11.68 SS G_CDS: 0.57 Total: -11.11 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.86 Total: 46.06 kcal Total: -63.26 0.64 -62.62 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260858759.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.597 kcal (2) G-P(sol) polarization free energy of solvation -63.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds