Wall clock time and date at job start Mon Mar 30 2020 01:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 119.99890 * 2 1 4 4 H 1.48503 * 109.47403 * 270.00082 * 3 2 1 5 5 H 1.48493 * 109.47286 * 30.00377 * 3 2 1 6 6 H 1.48503 * 109.47032 * 150.00699 * 3 2 1 7 7 C 1.37877 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99922 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00084 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47210 * 60.00209 * 9 7 2 11 11 F 1.39909 * 109.47167 * 299.99968 * 9 7 2 12 12 C 1.53002 * 109.47209 * 180.02562 * 9 7 2 13 13 C 1.53781 * 113.61609 * 64.99846 * 12 9 7 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 9 15 15 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 16 16 H 0.97001 * 120.00412 * 359.97438 * 1 2 3 17 17 H 1.08996 * 112.84723 * 293.80666 * 12 9 7 18 18 H 1.08999 * 113.61181 * 25.43284 * 13 12 9 19 19 H 1.08998 * 113.61680 * 254.52836 * 13 12 9 20 20 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 21 21 H 1.09002 * 113.61408 * 219.93560 * 14 13 12 22 22 H 1.08992 * 113.61675 * 140.02412 * 15 14 13 23 23 H 1.09000 * 113.60973 * 270.92699 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8751 -0.6805 0.8888 11 9 3.9774 -0.5343 -1.1435 12 6 4.0215 -2.6366 -0.0023 13 6 3.6649 -3.4151 -1.2797 14 6 5.0739 -4.0267 -1.2059 15 6 5.4962 -2.7695 -0.4274 16 1 -0.4851 0.8400 0.0004 17 1 3.7806 -3.1713 0.9164 18 1 3.5105 -2.7779 -2.1504 19 1 2.8653 -4.1423 -1.1389 20 1 5.1221 -4.9422 -0.6162 21 1 5.5596 -4.1227 -2.1770 22 1 6.1739 -2.9759 0.4008 23 1 5.8415 -1.9563 -1.0657 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260871295.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:09 Heat of formation + Delta-G solvation = -42.116197 kcal Electronic energy + Delta-G solvation = -8892.319686 eV Core-core repulsion = 7041.266407 eV Total energy + Delta-G solvation = -1851.053280 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.080 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -46.19627 -37.72597 -32.67710 -29.06688 -25.12298 -24.47302 -21.00999 -18.45839 -16.96411 -15.59306 -14.79981 -14.43857 -14.06820 -12.91501 -12.36852 -12.15007 -11.78701 -11.40067 -11.17787 -10.80871 -10.54566 -9.95236 -9.83428 -9.66213 -8.95423 -8.83066 -8.67038 -6.16156 -4.26795 3.35739 3.40892 3.46940 4.40802 5.16338 5.26711 5.29730 5.38037 5.56573 6.05546 6.17270 6.28723 6.34872 6.44686 6.57517 6.70834 6.78832 7.10029 7.38345 7.58603 8.37067 8.84862 9.44345 10.95136 Molecular weight = 158.08amu Principal moments of inertia in cm(-1) A = 0.086969 B = 0.019694 C = 0.017308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.874860 B = 1421.391852 C = 1617.394268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.080 3.920 3 Si 0.893 3.107 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.183 3.817 10 H 0.038 0.962 11 F -0.242 7.242 12 C -0.118 4.118 13 C -0.119 4.119 14 C -0.145 4.145 15 C -0.144 4.144 16 H 0.266 0.734 17 H 0.091 0.909 18 H 0.084 0.916 19 H 0.059 0.941 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.259 -3.563 -0.482 9.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.124 4.124 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.101 0.899 9 C 0.147 3.853 10 H 0.056 0.944 11 F -0.223 7.223 12 C -0.136 4.136 13 C -0.157 4.157 14 C -0.183 4.183 15 C -0.181 4.181 16 H 0.076 0.924 17 H 0.109 0.891 18 H 0.102 0.898 19 H 0.078 0.922 20 H 0.090 0.910 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.100 -3.439 -0.512 8.815 hybrid contribution 0.301 0.910 -0.031 0.959 sum 8.401 -2.529 -0.543 8.790 Atomic orbital electron populations 1.69914 1.06364 1.27394 1.48971 1.25022 0.94855 0.99564 0.92947 0.86615 0.79623 0.82763 0.78822 1.19979 1.22239 1.19348 1.21281 0.88496 0.95352 1.53571 0.89863 1.19520 0.95418 0.88358 0.82040 0.94414 1.92583 1.90729 1.82784 1.56198 1.22989 0.94356 0.97700 0.98594 1.22718 0.95180 0.98764 0.99012 1.22830 0.98468 0.97185 0.99777 1.23032 0.97080 0.98216 0.99806 0.92387 0.89115 0.89776 0.92176 0.91040 0.92343 0.92486 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.39 13.96 55.43 0.77 -26.62 14 2 C 0.08 2.37 5.47 -17.82 -0.10 2.27 14 3 Si 0.89 22.94 26.39 -169.99 -4.49 18.45 14 4 H -0.27 -7.07 7.11 56.52 0.40 -6.67 14 5 H -0.30 -7.38 7.11 56.52 0.40 -6.98 14 6 H -0.27 -6.67 6.54 56.52 0.37 -6.30 14 7 C -0.55 -15.75 9.08 -34.44 -0.31 -16.06 14 8 H 0.08 2.53 7.94 -52.49 -0.42 2.11 14 9 C 0.18 4.51 2.69 -27.88 -0.07 4.44 14 10 H 0.04 0.93 7.20 -51.93 -0.37 0.56 14 11 F -0.24 -6.14 13.44 2.25 0.03 -6.11 14 12 C -0.12 -2.40 3.68 -89.67 -0.33 -2.73 14 13 C -0.12 -2.29 7.13 -25.92 -0.18 -2.48 14 14 C -0.15 -2.29 8.07 -25.92 -0.21 -2.50 14 15 C -0.14 -2.48 7.55 -25.77 -0.19 -2.68 14 16 H 0.27 7.65 8.31 -40.82 -0.34 7.31 14 17 H 0.09 1.76 8.14 -51.93 -0.42 1.34 14 18 H 0.08 1.75 7.70 -51.93 -0.40 1.35 14 19 H 0.06 1.12 8.14 -51.93 -0.42 0.70 14 20 H 0.07 1.00 8.14 -51.93 -0.42 0.58 14 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 14 22 H 0.06 0.87 8.14 -51.93 -0.42 0.44 14 23 H 0.08 1.48 7.28 -51.93 -0.38 1.10 14 LS Contribution 197.36 15.07 2.97 2.97 Total: -1.00 -30.11 197.36 -4.96 -35.07 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: -2.85 Total: -4.04 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -1.40 Total: -19.73 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.03 Total: -6.11 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.49 Total: 18.45 kcal Total LS contribution 2.97 Total: 2.97 kcal Total: -30.11 -4.96 -35.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260871295.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.046 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds