Wall clock time and date at job start Mon Mar 30 2020 01:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 119.99890 * 2 1 4 4 H 1.48503 * 109.47403 * 270.00082 * 3 2 1 5 5 H 1.48493 * 109.47286 * 30.00377 * 3 2 1 6 6 H 1.48503 * 109.47032 * 150.00699 * 3 2 1 7 7 C 1.37877 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99922 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00084 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47210 * 60.00209 * 9 7 2 11 11 F 1.39909 * 109.47167 * 299.99968 * 9 7 2 12 12 C 1.53002 * 109.47209 * 180.02562 * 9 7 2 13 13 C 1.53781 * 113.61609 * 64.99846 * 12 9 7 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 9 15 15 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 16 16 H 0.97001 * 120.00412 * 359.97438 * 1 2 3 17 17 H 1.08996 * 112.84723 * 293.80666 * 12 9 7 18 18 H 1.08999 * 113.61181 * 25.43284 * 13 12 9 19 19 H 1.08998 * 113.61680 * 254.52836 * 13 12 9 20 20 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 21 21 H 1.09002 * 113.61408 * 219.93560 * 14 13 12 22 22 H 1.08992 * 113.61675 * 140.02412 * 15 14 13 23 23 H 1.09000 * 113.60973 * 270.92699 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8751 -0.6805 0.8888 11 9 3.9774 -0.5343 -1.1435 12 6 4.0215 -2.6366 -0.0023 13 6 3.6649 -3.4151 -1.2797 14 6 5.0739 -4.0267 -1.2059 15 6 5.4962 -2.7695 -0.4274 16 1 -0.4851 0.8400 0.0004 17 1 3.7806 -3.1713 0.9164 18 1 3.5105 -2.7779 -2.1504 19 1 2.8653 -4.1423 -1.1389 20 1 5.1221 -4.9422 -0.6162 21 1 5.5596 -4.1227 -2.1770 22 1 6.1739 -2.9759 0.4008 23 1 5.8415 -1.9563 -1.0657 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260871295.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:09 Heat of formation + Delta-G solvation = -60.820574 kcal Electronic energy + Delta-G solvation = -8893.130769 eV Core-core repulsion = 7041.266407 eV Total energy + Delta-G solvation = -1851.864362 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.080 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -48.20425 -39.19804 -34.90793 -31.03526 -26.73153 -26.16754 -22.78919 -19.99049 -19.16754 -17.39108 -16.62604 -16.36299 -15.73653 -14.92121 -14.45833 -13.84499 -13.34976 -13.02860 -13.00169 -12.64132 -12.41528 -11.77929 -11.41520 -11.31485 -10.97532 -10.71098 -10.65019 -8.42859 -6.58143 1.30555 1.34454 1.44320 2.26550 2.92652 3.80038 3.86714 3.94685 4.07599 4.33480 4.71169 4.84446 4.90146 4.98896 5.10633 5.15225 5.25633 5.31541 5.57659 5.79155 6.13696 6.53398 7.16419 8.72030 Molecular weight = 158.08amu Principal moments of inertia in cm(-1) A = 0.086969 B = 0.019694 C = 0.017308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.874860 B = 1421.391852 C = 1617.394268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.025 3.975 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.253 1.253 7 C -0.557 4.557 8 H 0.051 0.949 9 C 0.179 3.821 10 H 0.044 0.956 11 F -0.245 7.245 12 C -0.130 4.130 13 C -0.131 4.131 14 C -0.123 4.123 15 C -0.134 4.134 16 H 0.271 0.729 17 H 0.099 0.901 18 H 0.060 0.940 19 H 0.056 0.944 20 H 0.096 0.904 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.274 -3.679 -0.277 10.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.176 1.176 7 C -0.595 4.595 8 H 0.069 0.931 9 C 0.143 3.857 10 H 0.062 0.938 11 F -0.226 7.226 12 C -0.149 4.149 13 C -0.169 4.169 14 C -0.160 4.160 15 C -0.171 4.171 16 H 0.080 0.920 17 H 0.117 0.883 18 H 0.078 0.922 19 H 0.075 0.925 20 H 0.114 0.886 21 H 0.095 0.905 22 H 0.103 0.897 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.127 -3.567 -0.303 10.741 hybrid contribution -0.400 0.890 -0.101 0.980 sum 9.727 -2.677 -0.403 10.097 Atomic orbital electron populations 1.70027 1.07973 1.28575 1.50508 1.25888 0.95637 1.03258 0.92759 0.85693 0.79099 0.78684 0.78921 1.20073 1.21047 1.17645 1.21574 0.90973 0.94122 1.52792 0.93101 1.19545 0.92899 0.91371 0.81863 0.93847 1.92562 1.90501 1.83117 1.56444 1.23085 0.97290 0.94921 0.99584 1.22739 0.97861 0.98758 0.97546 1.22761 0.94951 0.97341 1.00955 1.22978 0.94916 0.98638 1.00604 0.91999 0.88255 0.92161 0.92535 0.88552 0.90550 0.89740 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.40 13.96 21.45 0.30 -58.10 14 2 C 0.02 1.47 5.47 84.66 0.46 1.94 14 3 Si 0.95 46.73 26.39 68.60 1.81 48.54 14 4 H -0.28 -13.50 7.11 99.48 0.71 -12.79 14 5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 14 6 H -0.25 -11.65 6.54 99.48 0.65 -11.00 14 7 C -0.56 -32.34 9.08 25.60 0.23 -32.10 14 8 H 0.05 3.20 7.94 -2.91 -0.02 3.17 14 9 C 0.18 8.68 2.69 29.85 0.08 8.77 14 10 H 0.04 2.06 7.20 -2.39 -0.02 2.04 14 11 F -0.24 -12.14 13.44 44.97 0.60 -11.53 14 12 C -0.13 -5.10 3.68 -10.18 -0.04 -5.14 14 13 C -0.13 -4.91 7.13 31.12 0.22 -4.69 14 14 C -0.12 -3.43 8.07 31.12 0.25 -3.18 14 15 C -0.13 -4.16 7.55 31.21 0.24 -3.93 14 16 H 0.27 15.77 8.31 -92.71 -0.77 15.00 14 17 H 0.10 3.68 8.14 -2.39 -0.02 3.66 14 18 H 0.06 2.51 7.70 -2.39 -0.02 2.49 14 19 H 0.06 2.09 8.14 -2.39 -0.02 2.07 14 20 H 0.10 2.26 8.14 -2.39 -0.02 2.24 14 21 H 0.08 1.89 8.14 -2.39 -0.02 1.88 14 22 H 0.08 2.18 8.14 -2.39 -0.02 2.16 14 23 H 0.07 2.44 7.28 -2.39 -0.02 2.42 14 Total: -1.00 -64.01 197.36 5.28 -58.73 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: 1.12 Total: 0.70 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 1.45 Total: -38.34 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.30 Total: -58.10 kcal Atomic # 9 Polarization: -12.14 SS G_CDS: 0.60 Total: -11.53 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.81 Total: 48.54 kcal Total: -64.01 5.28 -58.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260871295.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.091 kcal (2) G-P(sol) polarization free energy of solvation -64.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds