Wall clock time and date at job start Mon Mar 30 2020 01:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47043 * 270.00034 * 3 2 1 5 5 H 1.48509 * 109.47095 * 29.99821 * 3 2 1 6 6 H 1.48495 * 109.47406 * 149.99604 * 3 2 1 7 7 C 1.37876 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00248 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99819 * 180.02562 * 7 2 1 10 10 H 1.09002 * 110.88963 * 300.70030 * 9 7 2 11 11 C 1.54763 * 111.00704 * 176.80688 * 9 7 2 12 12 C 1.51686 * 102.48306 * 217.92850 * 11 9 7 13 13 O 1.35229 * 125.77585 * 195.25633 * 12 11 9 14 14 N 1.27740 * 108.44989 * 15.28878 * 12 11 9 15 15 O 1.41470 * 113.16132 * 0.32814 * 14 12 11 16 16 H 0.96996 * 120.00808 * 0.02562 * 1 2 3 17 17 H 1.08999 * 110.80955 * 336.17388 * 11 9 7 18 18 H 1.09008 * 110.80568 * 99.49034 * 11 9 7 19 19 H 0.96698 * 113.99883 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 1 3.9005 -0.6742 -0.8745 11 6 4.0664 -2.6364 0.0821 12 6 5.2741 -2.4729 0.9852 13 8 6.2714 -3.3726 1.1423 14 7 5.1894 -1.3419 1.5728 15 8 4.0282 -0.6159 1.2176 16 1 -0.4851 0.8399 -0.0004 17 1 3.3349 -3.3080 0.5317 18 1 4.3624 -2.9934 -0.9044 19 1 6.9591 -3.0933 1.7620 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260894548.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:11 Heat of formation + Delta-G solvation = -46.770811 kcal Electronic energy + Delta-G solvation = -8508.455410 eV Core-core repulsion = 6606.713070 eV Total energy + Delta-G solvation = -1901.742341 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 157.053 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -41.00499 -38.46880 -34.94539 -32.56030 -31.92606 -27.51598 -23.20914 -22.32136 -19.43934 -18.64655 -17.29089 -16.70645 -16.05980 -15.18524 -15.11839 -14.69571 -14.05139 -13.38904 -12.96471 -12.74978 -12.22314 -11.95647 -11.51428 -11.33335 -10.87253 -9.89364 -8.44385 -6.60242 1.14127 1.32473 1.35410 1.63463 1.98166 2.34454 2.68048 2.99473 3.91803 3.95453 4.22173 4.70574 4.83905 5.02062 5.29366 6.04597 6.21921 6.50575 6.81432 7.15879 8.68882 Molecular weight = 157.05amu Principal moments of inertia in cm(-1) A = 0.098800 B = 0.019208 C = 0.016960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 283.332336 B = 1457.399320 C = 1650.543948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.035 3.965 3 Si 0.930 3.070 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.231 1.231 7 C -0.538 4.538 8 H 0.057 0.943 9 C 0.136 3.864 10 H 0.055 0.945 11 C -0.111 4.111 12 C 0.279 3.721 13 O -0.433 6.433 14 N -0.415 5.415 15 O -0.217 6.217 16 H 0.273 0.727 17 H 0.101 0.899 18 H 0.123 0.877 19 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.810 -3.222 -0.142 11.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.167 4.167 3 Si 0.753 3.247 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.155 1.155 7 C -0.576 4.576 8 H 0.075 0.925 9 C 0.080 3.920 10 H 0.073 0.927 11 C -0.150 4.150 12 C 0.050 3.950 13 O -0.231 6.231 14 N -0.183 5.183 15 O -0.235 6.235 16 H 0.082 0.918 17 H 0.119 0.881 18 H 0.141 0.859 19 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 10.768 -2.778 0.200 11.122 hybrid contribution -0.233 0.410 -0.127 0.488 sum 10.535 -2.368 0.073 10.798 Atomic orbital electron populations 1.69989 1.08093 1.28923 1.49358 1.25843 0.95498 1.03304 0.92021 0.85992 0.80959 0.78385 0.79384 1.18747 1.20774 1.15463 1.21089 0.88842 0.94377 1.53246 0.92511 1.21584 0.94466 0.89981 0.86003 0.92696 1.22669 0.91831 0.99474 1.01023 1.24169 0.89730 0.87651 0.93469 1.84961 1.32961 1.39306 1.65895 1.77670 1.08053 1.07755 1.24809 1.91458 1.35867 1.51657 1.44567 0.91754 0.88093 0.85876 0.71774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.96 21.45 0.30 -56.34 13 2 C 0.04 2.04 5.47 84.66 0.46 2.51 13 3 Si 0.93 44.89 27.11 68.60 1.86 46.75 13 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 13 5 H -0.28 -13.39 7.11 99.48 0.71 -12.68 13 6 H -0.23 -11.26 5.55 99.48 0.55 -10.71 13 7 C -0.54 -30.42 9.40 25.60 0.24 -30.18 13 8 H 0.06 3.43 7.88 -2.91 -0.02 3.40 13 9 C 0.14 6.47 2.96 30.45 0.09 6.56 13 10 H 0.06 2.52 7.59 -2.39 -0.02 2.50 13 11 C -0.11 -4.15 6.63 30.76 0.20 -3.95 13 12 C 0.28 9.68 8.70 89.02 0.77 10.46 13 13 O -0.43 -10.69 13.62 -85.11 -1.16 -11.85 13 14 N -0.41 -17.37 12.46 -166.14 -2.07 -19.44 13 15 O -0.22 -10.94 9.64 -38.49 -0.37 -11.31 13 16 H 0.27 15.56 8.31 -92.71 -0.77 14.79 13 17 H 0.10 3.87 7.79 -2.39 -0.02 3.85 13 18 H 0.12 3.78 8.14 -2.38 -0.02 3.77 13 19 H 0.42 6.39 9.06 -74.06 -0.67 5.72 13 Total: -1.00 -68.10 178.48 0.78 -67.33 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: 0.45 Total: -0.53 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 1.77 Total: -14.60 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -1.77 Total: -75.78 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -1.53 Total: -23.16 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.86 Total: 46.75 kcal Total: -68.10 0.78 -67.33 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894548.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.556 kcal (2) G-P(sol) polarization free energy of solvation -68.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds