Wall clock time and date at job start Mon Mar 30 2020 01:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99966 * 2 1 4 4 H 1.48499 * 109.46720 * 270.00129 * 3 2 1 5 5 H 1.48499 * 109.46898 * 29.99941 * 3 2 1 6 6 H 1.48496 * 109.47272 * 149.99894 * 3 2 1 7 7 C 1.38808 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99943 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00304 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00134 * 180.02562 * 9 7 2 11 11 C 1.53042 * 113.14937 * 155.00078 * 10 9 7 12 12 S 1.81425 * 89.93235 * 148.12510 * 11 10 9 13 13 C 1.53042 * 113.14796 * 255.37064 * 10 9 7 14 14 H 0.97004 * 119.99972 * 359.97438 * 1 2 3 15 15 H 0.97004 * 119.99646 * 0.02562 * 9 7 2 16 16 H 1.08996 * 112.52562 * 25.18315 * 10 9 7 17 17 H 1.09002 * 113.14805 * 263.40461 * 11 10 9 18 18 H 1.09003 * 113.15177 * 32.84905 * 11 10 9 19 19 H 1.08996 * 113.15356 * 327.11552 * 13 10 9 20 20 H 1.09005 * 113.14694 * 96.55477 * 13 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.5172 -2.3544 -0.5953 12 16 6.0992 -3.6532 0.5299 13 6 4.7213 -2.8139 1.3614 14 1 -0.4850 0.8401 0.0004 15 1 3.8646 -0.3621 -0.0004 16 1 3.5317 -3.2882 -0.4280 17 1 5.5633 -2.6446 -1.6449 18 1 5.9825 -1.3864 -0.4094 19 1 5.0333 -1.9348 1.9251 20 1 4.1003 -3.4884 1.9510 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260971595.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:07 Heat of formation + Delta-G solvation = 12.515594 kcal Electronic energy + Delta-G solvation = -7009.847128 eV Core-core repulsion = 5526.117031 eV Total energy + Delta-G solvation = -1483.730097 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 159.041 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -38.37013 -34.79178 -32.14226 -27.10316 -25.59669 -22.11462 -19.76638 -17.62053 -16.74612 -15.93524 -15.73472 -14.70972 -14.17750 -13.77974 -13.54322 -12.95572 -12.83724 -12.17167 -11.86190 -11.80381 -11.24648 -11.03864 -9.46299 -8.79441 -8.04862 -5.42207 0.88141 1.04186 1.41081 1.44586 1.51483 2.47875 3.23820 3.55875 3.79255 4.05097 4.14712 4.46523 4.59681 4.80969 5.08200 5.72823 6.17655 7.01623 7.72726 7.93794 9.15597 Molecular weight = 159.04amu Principal moments of inertia in cm(-1) A = 0.106905 B = 0.015082 C = 0.014040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 261.851487 B = 1856.054950 C = 1993.763322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.056 4.056 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.247 1.247 7 C -0.246 4.246 8 H 0.062 0.938 9 N -0.728 5.728 10 C 0.178 3.822 11 C -0.077 4.077 12 S -0.334 6.334 13 C -0.094 4.094 14 H 0.260 0.740 15 H 0.372 0.628 16 H 0.098 0.902 17 H 0.107 0.893 18 H 0.112 0.888 19 H 0.102 0.898 20 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.165 -1.731 0.112 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.248 4.248 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.171 1.171 7 C -0.377 4.377 8 H 0.080 0.920 9 N -0.369 5.369 10 C 0.066 3.934 11 C -0.227 4.227 12 S -0.110 6.110 13 C -0.246 4.246 14 H 0.069 0.931 15 H 0.206 0.794 16 H 0.116 0.884 17 H 0.126 0.874 18 H 0.130 0.870 19 H 0.120 0.880 20 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.908 -2.862 0.247 12.250 hybrid contribution -0.711 1.761 0.051 1.900 sum 11.198 -1.101 0.299 11.256 Atomic orbital electron populations 1.69885 1.07297 1.26970 1.58617 1.25538 0.96063 1.01416 1.01792 0.85432 0.78820 0.79375 0.78281 1.20182 1.22437 1.17116 1.19081 0.82287 0.93837 1.42509 0.91952 1.42736 1.02738 1.03322 1.88090 1.21750 0.90598 0.89455 0.91594 1.24955 0.96459 0.98499 1.02768 1.88652 1.50450 1.45436 1.26432 1.25589 0.94059 1.00799 1.04113 0.93135 0.79377 0.88416 0.87404 0.87013 0.87964 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.66 13.97 21.65 0.30 -60.36 14 2 C -0.06 -3.13 5.50 84.86 0.47 -2.67 14 3 Si 0.95 42.82 27.74 68.60 1.90 44.72 14 4 H -0.28 -12.06 7.11 99.48 0.71 -11.36 14 5 H -0.30 -13.73 7.11 99.48 0.71 -13.02 14 6 H -0.25 -9.77 6.52 99.48 0.65 -9.12 14 7 C -0.25 -13.26 10.45 84.03 0.88 -12.39 14 8 H 0.06 3.69 8.06 -2.91 -0.02 3.67 14 9 N -0.73 -31.21 5.17 -354.67 -1.83 -33.04 14 10 C 0.18 6.24 4.14 45.02 0.19 6.43 14 11 C -0.08 -2.19 7.69 72.00 0.55 -1.63 14 12 S -0.33 -10.06 24.80 -56.49 -1.40 -11.47 14 13 C -0.09 -2.99 7.76 72.00 0.56 -2.43 14 14 H 0.26 15.34 8.31 -92.71 -0.77 14.57 14 15 H 0.37 14.98 5.78 -92.71 -0.54 14.45 14 16 H 0.10 3.57 8.10 -2.39 -0.02 3.55 14 17 H 0.11 2.74 8.14 -2.39 -0.02 2.72 14 18 H 0.11 2.88 8.14 -2.39 -0.02 2.86 14 19 H 0.10 3.14 8.14 -2.39 -0.02 3.12 14 20 H 0.09 2.80 8.14 -2.38 -0.02 2.78 14 Total: -1.00 -60.86 190.75 2.25 -58.62 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.63 Total: 14.22 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 2.64 Total: -12.69 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -1.53 Total: -93.40 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.90 Total: 44.72 kcal Atomic # 16 Polarization: -10.06 SS G_CDS: -1.40 Total: -11.47 kcal Total: -60.86 2.25 -58.62 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260971595.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.131 kcal (2) G-P(sol) polarization free energy of solvation -60.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds