Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00449 * 2 1 4 4 H 1.48500 * 109.47367 * 239.99819 * 3 2 1 5 5 H 1.48502 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46984 * 119.99895 * 3 2 1 7 7 C 1.37884 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99969 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99998 * 0.02562 * 7 2 1 10 10 O 1.42099 * 102.99766 * 293.85059 * 9 7 2 11 11 C 1.81399 * 102.99895 * 179.97438 * 9 7 2 12 12 C 1.53001 * 117.49561 * 253.74513 * 11 9 7 13 13 C 1.53006 * 117.49762 * 185.08732 * 11 9 7 14 14 H 0.97001 * 119.99421 * 359.97438 * 1 2 3 15 15 H 1.08995 * 115.54869 * 39.41736 * 11 9 7 16 16 H 1.09001 * 117.50050 * 0.02562 * 12 11 9 17 17 H 1.09004 * 117.49478 * 145.02299 * 12 11 9 18 18 H 1.08991 * 117.49536 * 214.98027 * 13 11 9 19 19 H 1.08996 * 117.49453 * 359.97438 * 13 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 16 1.1233 -2.7200 0.0005 10 8 0.4782 -2.7166 1.2666 11 6 2.4499 -3.9573 0.0005 12 6 2.7074 -4.7169 -1.3024 13 6 2.0445 -5.4277 -0.1198 14 1 -0.4849 0.8401 0.0004 15 1 3.3118 -3.7223 0.6249 16 1 2.0800 -4.4729 -2.1597 17 1 3.7388 -4.9820 -1.5349 18 1 2.6400 -6.1601 0.4251 19 1 0.9807 -5.6516 -0.1985 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993923.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = -28.656415 kcal Electronic energy + Delta-G solvation = -7027.504907 eV Core-core repulsion = 5444.270796 eV Total energy + Delta-G solvation = -1583.234111 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 160.030 amu Computer time = 0.04 seconds Orbital eigenvalues (eV) -35.80605 -33.52937 -32.73824 -25.78995 -21.81125 -21.79303 -17.78321 -15.87898 -15.23755 -14.57550 -13.79571 -13.12269 -11.86475 -11.52480 -11.31404 -11.04538 -10.90552 -10.64335 -10.44318 -9.86786 -9.51731 -8.96406 -8.21946 -6.82356 -6.27816 -4.75397 3.15420 3.21010 3.23428 3.70803 4.19010 4.38432 4.90861 5.34934 5.62954 5.65308 5.78943 6.09699 6.29087 6.34568 6.62621 6.79329 7.52316 8.25283 9.13211 10.52090 Molecular weight = 160.03amu Principal moments of inertia in cm(-1) A = 0.095380 B = 0.018335 C = 0.016433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.490961 B = 1526.782444 C = 1703.431185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.118 3.882 3 Si 0.907 3.093 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.821 4.821 8 H 0.078 0.922 9 S 1.369 4.631 10 O -0.907 6.907 11 C -0.502 4.502 12 C -0.138 4.138 13 C -0.158 4.158 14 H 0.280 0.720 15 H 0.093 0.907 16 H 0.102 0.898 17 H 0.082 0.918 18 H 0.080 0.920 19 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 -4.247 -5.905 7.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.095 4.095 3 Si 0.732 3.268 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.962 4.962 8 H 0.097 0.903 9 S 1.565 4.435 10 O -0.902 6.902 11 C -0.612 4.612 12 C -0.176 4.176 13 C -0.196 4.196 14 H 0.090 0.910 15 H 0.112 0.888 16 H 0.121 0.879 17 H 0.100 0.900 18 H 0.098 0.902 19 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.409 -4.376 -5.865 7.452 hybrid contribution 2.176 1.352 1.927 3.205 sum 3.585 -3.024 -3.938 6.124 Atomic orbital electron populations 1.69888 1.06460 1.29314 1.43433 1.24772 0.94522 0.99911 0.90278 0.86425 0.79952 0.81033 0.79372 1.19090 1.20486 1.19738 1.27439 1.01917 1.06050 1.60823 0.90346 1.68691 0.83427 0.83887 1.07469 1.92791 1.64613 1.85722 1.47095 1.30353 1.19193 1.07647 1.03978 1.22450 1.00861 1.02924 0.91334 1.22453 1.00628 0.93682 1.02843 0.90953 0.88832 0.87937 0.89984 0.90183 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.90 13.15 55.43 0.73 -24.17 13 2 C 0.12 3.34 5.46 -17.82 -0.10 3.24 13 3 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 13 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 13 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 13 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 13 7 C -0.82 -23.26 9.38 30.60 0.29 -22.97 13 8 H 0.08 2.16 7.81 -52.49 -0.41 1.75 13 9 S 1.37 34.77 13.19 -107.50 -1.42 33.35 13 10 O -0.91 -29.00 17.82 -35.23 -0.63 -29.63 13 11 C -0.50 -10.73 6.30 -26.73 -0.17 -10.90 13 12 C -0.14 -2.25 10.30 -26.69 -0.27 -2.52 13 13 C -0.16 -2.77 10.30 -26.69 -0.27 -3.05 13 14 H 0.28 7.48 8.31 -40.82 -0.34 7.14 13 15 H 0.09 2.13 8.14 -51.93 -0.42 1.71 13 16 H 0.10 1.42 8.14 -51.93 -0.42 1.00 13 17 H 0.08 1.20 8.14 -51.93 -0.42 0.78 13 18 H 0.08 1.28 8.14 -51.93 -0.42 0.86 13 19 H 0.09 1.52 8.14 -51.93 -0.42 1.09 13 LS Contribution 193.59 15.07 2.92 2.92 Total: -1.00 -35.05 193.59 -5.61 -40.66 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -1.66 Total: -3.08 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: -0.53 Total: -36.20 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.73 Total: -24.17 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.63 Total: -29.63 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 34.77 SS G_CDS: -1.42 Total: 33.35 kcal Total LS contribution 2.92 Total: 2.92 kcal Total: -35.05 -5.61 -40.66 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993923.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.003 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.04 seconds