Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00449 * 2 1 4 4 H 1.48500 * 109.47367 * 239.99819 * 3 2 1 5 5 H 1.48502 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46984 * 119.99895 * 3 2 1 7 7 C 1.37884 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99969 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99998 * 0.02562 * 7 2 1 10 10 O 1.42099 * 102.99766 * 293.85059 * 9 7 2 11 11 C 1.81399 * 102.99895 * 179.97438 * 9 7 2 12 12 C 1.53001 * 117.49561 * 253.74513 * 11 9 7 13 13 C 1.53006 * 117.49762 * 185.08732 * 11 9 7 14 14 H 0.97001 * 119.99421 * 359.97438 * 1 2 3 15 15 H 1.08995 * 115.54869 * 39.41736 * 11 9 7 16 16 H 1.09001 * 117.50050 * 0.02562 * 12 11 9 17 17 H 1.09004 * 117.49478 * 145.02299 * 12 11 9 18 18 H 1.08991 * 117.49536 * 214.98027 * 13 11 9 19 19 H 1.08996 * 117.49453 * 359.97438 * 13 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 16 1.1233 -2.7200 0.0005 10 8 0.4782 -2.7166 1.2666 11 6 2.4499 -3.9573 0.0005 12 6 2.7074 -4.7169 -1.3024 13 6 2.0445 -5.4277 -0.1198 14 1 -0.4849 0.8401 0.0004 15 1 3.3118 -3.7223 0.6249 16 1 2.0800 -4.4729 -2.1597 17 1 3.7388 -4.9820 -1.5349 18 1 2.6400 -6.1601 0.4251 19 1 0.9807 -5.6516 -0.1985 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993923.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = -55.219514 kcal Electronic energy + Delta-G solvation = -7028.656770 eV Core-core repulsion = 5444.270796 eV Total energy + Delta-G solvation = -1584.385974 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 160.030 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -37.29616 -35.77444 -34.88730 -27.95630 -23.48998 -23.13318 -19.86071 -17.65332 -17.30349 -16.34259 -15.51794 -15.08975 -13.78143 -13.46065 -13.32669 -12.89822 -12.68682 -12.28788 -12.20622 -11.45414 -11.19233 -11.01256 -10.30591 -8.90668 -8.39179 -6.95651 1.28548 1.34634 1.44041 1.82466 2.28406 2.74749 2.88506 3.40218 4.03085 4.12323 4.25942 4.50388 4.80495 4.96530 5.19055 5.36987 5.38183 6.07565 6.97281 8.42943 Molecular weight = 160.03amu Principal moments of inertia in cm(-1) A = 0.095380 B = 0.018335 C = 0.016433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.490961 B = 1526.782444 C = 1703.431185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.973 3.027 4 H -0.243 1.243 5 H -0.264 1.264 6 H -0.281 1.281 7 C -0.854 4.854 8 H 0.075 0.925 9 S 1.393 4.607 10 O -0.985 6.985 11 C -0.539 4.539 12 C -0.103 4.103 13 C -0.150 4.150 14 H 0.288 0.712 15 H 0.073 0.927 16 H 0.131 0.869 17 H 0.108 0.892 18 H 0.098 0.902 19 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -4.569 -7.317 9.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.147 4.147 3 Si 0.794 3.206 4 H -0.166 1.166 5 H -0.188 1.188 6 H -0.207 1.207 7 C -0.995 4.995 8 H 0.094 0.906 9 S 1.595 4.405 10 O -0.980 6.980 11 C -0.653 4.653 12 C -0.141 4.141 13 C -0.188 4.188 14 H 0.097 0.903 15 H 0.091 0.909 16 H 0.149 0.851 17 H 0.127 0.873 18 H 0.117 0.883 19 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.468 -4.672 -7.288 9.002 hybrid contribution 1.925 1.303 2.333 3.294 sum 4.393 -3.369 -4.955 7.430 Atomic orbital electron populations 1.69967 1.07933 1.30695 1.43731 1.25784 0.95495 1.03847 0.89545 0.85421 0.78882 0.76572 0.79753 1.16588 1.18845 1.20657 1.27797 1.02041 1.07981 1.61643 0.90628 1.67410 0.84233 0.83420 1.05442 1.92676 1.68354 1.87079 1.49904 1.29789 1.17306 1.09032 1.09213 1.22807 1.02959 0.98172 0.90184 1.22737 1.02109 0.90754 1.03213 0.90265 0.90868 0.85055 0.87322 0.88314 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.21 13.15 21.45 0.28 -51.93 13 2 C 0.06 3.57 5.46 84.66 0.46 4.04 13 3 Si 0.97 42.97 29.54 68.60 2.03 45.00 13 4 H -0.24 -9.72 7.11 99.48 0.71 -9.02 13 5 H -0.26 -10.91 7.11 99.48 0.71 -10.20 13 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 13 7 C -0.85 -48.97 9.38 67.74 0.64 -48.34 13 8 H 0.08 4.21 7.81 -2.91 -0.02 4.19 13 9 S 1.39 71.79 13.19 -56.49 -0.75 71.05 13 10 O -0.98 -65.05 17.82 -148.98 -2.65 -67.70 13 11 C -0.54 -22.42 6.30 30.60 0.19 -22.23 13 12 C -0.10 -2.97 10.30 30.62 0.32 -2.65 13 13 C -0.15 -4.82 10.30 30.62 0.32 -4.50 13 14 H 0.29 15.40 8.31 -92.71 -0.77 14.63 13 15 H 0.07 3.33 8.14 -2.39 -0.02 3.31 13 16 H 0.13 3.04 8.14 -2.39 -0.02 3.02 13 17 H 0.11 2.63 8.14 -2.38 -0.02 2.61 13 18 H 0.10 2.82 8.14 -2.39 -0.02 2.80 13 19 H 0.11 3.14 8.14 -2.39 -0.02 3.12 13 Total: -1.00 -76.87 193.59 2.06 -74.81 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: 1.23 Total: 2.46 kcal Atomic # 6 Polarization: -75.60 SS G_CDS: 1.92 Total: -73.68 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.28 Total: -51.93 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -2.65 Total: -67.70 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 71.79 SS G_CDS: -0.75 Total: 71.05 kcal Total: -76.87 2.06 -74.81 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993923.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.590 kcal (2) G-P(sol) polarization free energy of solvation -76.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds