Wall clock time and date at job start Mon Mar 30 2020 01:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99953 * 2 1 4 4 H 1.48494 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47195 * 300.00413 * 3 2 1 6 6 H 1.48501 * 109.46788 * 60.00272 * 3 2 1 7 7 C 1.37874 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00055 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99898 * 359.97438 * 7 2 1 10 10 F 1.39905 * 110.27285 * 300.70172 * 9 7 2 11 11 C 1.54595 * 110.39485 * 178.55656 * 9 7 2 12 12 C 1.54934 * 102.92338 * 219.08239 * 11 9 7 13 13 N 1.48535 * 103.22566 * 37.41113 * 12 11 9 14 14 C 1.47892 * 105.82310 * 320.79375 * 13 12 11 15 15 H 0.97004 * 120.00174 * 359.97438 * 1 2 3 16 16 H 1.09002 * 110.72117 * 337.43969 * 11 9 7 17 17 H 1.08995 * 110.72452 * 100.72029 * 11 9 7 18 18 H 1.08999 * 110.66675 * 278.97969 * 12 11 9 19 19 H 1.09005 * 110.81358 * 155.91299 * 12 11 9 20 20 H 1.00907 * 110.99934 * 200.27468 * 13 12 11 21 21 H 1.09004 * 109.92157 * 265.97923 * 14 13 12 22 22 H 1.08999 * 109.91970 * 144.67936 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 9 0.4289 -2.5842 1.1282 11 6 2.2363 -3.6899 -0.0377 12 6 1.5330 -4.6920 -0.9872 13 7 0.9197 -3.8127 -2.0153 14 6 0.4115 -2.6316 -1.2846 15 1 -0.4850 0.8401 0.0004 16 1 3.1986 -3.3817 -0.4464 17 1 2.3582 -4.1207 0.9560 18 1 0.7658 -5.2535 -0.4541 19 1 2.2570 -5.3683 -1.4418 20 1 0.1723 -4.2882 -2.4986 21 1 -0.6381 -2.7765 -1.0286 22 1 0.5269 -1.7377 -1.8976 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261018608.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:58 Heat of formation + Delta-G solvation = -54.034712 kcal Electronic energy + Delta-G solvation = -9134.964760 eV Core-core repulsion = 7217.968744 eV Total energy + Delta-G solvation = -1916.996016 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 159.075 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -45.64809 -36.77265 -32.67278 -29.16042 -27.73884 -24.37107 -20.79049 -19.38081 -16.70083 -15.83317 -14.86029 -14.08969 -13.32359 -13.07837 -12.53531 -12.09649 -11.59923 -11.39798 -10.94417 -10.93776 -10.49054 -10.36126 -10.19125 -9.07955 -8.73320 -8.56890 -7.74260 -6.12251 -4.26323 3.26977 3.34299 3.39115 4.35519 5.10084 5.18931 5.63401 5.79622 6.02338 6.27923 6.36588 6.49218 6.77355 6.86456 7.37174 7.48884 7.74180 7.85944 8.04589 8.25420 8.76791 9.45869 10.94590 Molecular weight = 159.08amu Principal moments of inertia in cm(-1) A = 0.080869 B = 0.019748 C = 0.019482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.155398 B = 1417.503504 C = 1436.846792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.073 3.927 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.231 3.769 10 F -0.230 7.230 11 C -0.140 4.140 12 C 0.035 3.965 13 N -0.677 5.677 14 C 0.046 3.954 15 H 0.264 0.736 16 H 0.079 0.921 17 H 0.062 0.938 18 H 0.030 0.970 19 H 0.069 0.931 20 H 0.321 0.679 21 H 0.029 0.971 22 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 -4.357 -1.639 4.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.132 4.132 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.087 0.913 9 C 0.212 3.788 10 F -0.211 7.211 11 C -0.179 4.179 12 C -0.094 4.094 13 N -0.305 5.305 14 C -0.083 4.083 15 H 0.074 0.926 16 H 0.097 0.903 17 H 0.081 0.919 18 H 0.048 0.952 19 H 0.087 0.913 20 H 0.135 0.865 21 H 0.048 0.952 22 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.049 -3.927 -1.862 4.805 hybrid contribution -0.550 0.532 0.532 0.932 sum 1.498 -3.396 -1.329 3.942 Atomic orbital electron populations 1.70023 1.06042 1.27003 1.47784 1.25083 0.94938 0.99671 0.93557 0.86395 0.80184 0.82928 0.77680 1.19479 1.20727 1.20812 1.21369 0.93400 0.89521 1.54067 0.91346 1.19126 0.85583 0.94088 0.79985 1.92734 1.75528 1.97385 1.55481 1.23086 1.00322 0.96246 0.98201 1.22993 0.97684 0.95439 0.93292 1.63201 1.33293 1.07922 1.26048 1.23229 0.95924 0.92776 0.96343 0.92645 0.90278 0.91930 0.95161 0.91286 0.86482 0.95247 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.49 12.09 55.43 0.67 -24.82 14 2 C 0.07 2.05 5.06 -17.82 -0.09 1.96 14 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 14 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 14 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 14 7 C -0.55 -15.44 8.13 -34.44 -0.28 -15.72 14 8 H 0.07 1.89 7.56 -52.49 -0.40 1.49 14 9 C 0.23 6.12 1.17 -90.41 -0.11 6.01 14 10 F -0.23 -6.64 16.39 2.25 0.04 -6.60 14 11 C -0.14 -3.08 6.39 -24.87 -0.16 -3.24 14 12 C 0.04 0.68 7.55 -1.90 -0.01 0.66 14 13 N -0.68 -13.99 7.51 -110.09 -0.83 -14.81 14 14 C 0.05 1.15 6.22 -2.76 -0.02 1.13 14 15 H 0.26 7.24 8.31 -40.82 -0.34 6.91 14 16 H 0.08 1.71 7.70 -51.93 -0.40 1.31 14 17 H 0.06 1.29 8.12 -51.93 -0.42 0.87 14 18 H 0.03 0.55 8.14 -51.93 -0.42 0.13 14 19 H 0.07 1.14 8.14 -51.93 -0.42 0.72 14 20 H 0.32 5.69 8.92 -39.29 -0.35 5.34 14 21 H 0.03 0.74 8.02 -51.93 -0.42 0.32 14 22 H 0.09 2.46 7.22 -51.93 -0.37 2.09 14 LS Contribution 193.51 15.07 2.92 2.92 Total: -1.00 -30.05 193.51 -5.23 -35.29 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -2.34 Total: 0.86 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -0.67 Total: -9.20 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: -0.16 Total: -39.63 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.04 Total: -6.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 2.92 Total: 2.92 kcal Total: -30.05 -5.23 -35.29 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018608.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.748 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds