Wall clock time and date at job start Mon Mar 30 2020 01:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 F 1.39898 * 110.28590 * 57.87307 * 9 7 2 11 11 C 1.54263 * 110.32268 * 180.02562 * 9 7 2 12 12 C 1.54383 * 105.05988 * 118.89469 * 11 9 7 13 13 N 1.48568 * 104.59291 * 23.85276 * 12 11 9 14 14 C 1.48560 * 104.22134 * 320.51496 * 13 12 11 15 15 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 16 16 H 1.08992 * 110.32191 * 237.79415 * 11 9 7 17 17 H 1.09001 * 110.32441 * 0.02562 * 11 9 7 18 18 H 1.08997 * 110.41027 * 142.62552 * 12 11 9 19 19 H 1.09000 * 110.41064 * 265.07574 * 12 11 9 20 20 H 1.00896 * 110.99451 * 200.95896 * 13 12 11 21 21 H 1.09002 * 110.41024 * 280.70455 * 14 13 12 22 22 H 1.09000 * 110.41149 * 158.26275 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 9 0.4038 -2.5701 -1.1115 11 6 2.2360 -3.6864 -0.0005 12 6 1.9377 -4.4551 1.3047 13 7 0.5358 -4.0946 1.6393 14 6 0.4405 -2.6504 1.3047 15 1 -0.4849 -0.8401 0.0004 16 1 2.0585 -4.3256 -0.8654 17 1 3.2644 -3.3252 -0.0001 18 1 2.0254 -5.5293 1.1417 19 1 2.6126 -4.1336 2.0979 20 1 0.3457 -4.2525 2.6176 21 1 0.8812 -2.0464 2.0980 22 1 -0.5989 -2.3657 1.1417 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261018615.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:59 Heat of formation + Delta-G solvation = -58.867386 kcal Electronic energy + Delta-G solvation = -9177.110262 eV Core-core repulsion = 7259.904686 eV Total energy + Delta-G solvation = -1917.205577 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 159.075 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -45.91430 -37.01226 -32.84816 -29.30866 -27.52732 -24.23963 -20.92315 -19.59471 -17.50062 -15.56675 -15.06323 -13.83303 -13.42300 -13.27654 -13.03511 -12.48298 -11.63862 -11.24913 -10.91434 -10.83633 -10.52191 -10.44644 -10.11547 -9.43368 -8.57876 -8.48020 -7.96693 -6.46850 -4.31899 3.36963 3.41851 3.57882 4.42439 4.97662 5.21660 5.53757 5.64020 5.81799 6.02982 6.29633 6.36200 6.62367 6.64477 7.00744 7.19887 7.48564 7.86285 7.97281 8.26261 8.70901 9.49094 10.89896 Molecular weight = 159.08amu Principal moments of inertia in cm(-1) A = 0.079883 B = 0.020117 C = 0.019421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.429479 B = 1391.511736 C = 1441.405814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.032 3.968 3 Si 1.076 2.924 4 H -0.286 1.286 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.633 4.633 8 H 0.061 0.939 9 C 0.223 3.777 10 F -0.232 7.232 11 C -0.136 4.136 12 C 0.039 3.961 13 N -0.674 5.674 14 C 0.025 3.975 15 H 0.280 0.720 16 H 0.063 0.937 17 H 0.072 0.928 18 H 0.069 0.931 19 H 0.035 0.965 20 H 0.324 0.676 21 H 0.051 0.949 22 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.537 -3.866 3.040 6.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.177 4.177 3 Si 0.903 3.097 4 H -0.213 1.213 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.671 4.671 8 H 0.080 0.920 9 C 0.204 3.796 10 F -0.213 7.213 11 C -0.175 4.175 12 C -0.091 4.091 13 N -0.301 5.301 14 C -0.105 4.105 15 H 0.092 0.908 16 H 0.081 0.919 17 H 0.091 0.909 18 H 0.087 0.913 19 H 0.054 0.946 20 H 0.137 0.863 21 H 0.069 0.931 22 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.952 -2.513 2.391 4.555 hybrid contribution 0.678 -1.288 0.733 1.630 sum 3.630 -3.802 3.124 6.115 Atomic orbital electron populations 1.70694 1.06900 1.32053 1.43121 1.25967 0.96509 1.02934 0.92253 0.83456 0.74728 0.74656 0.76841 1.21254 1.20717 1.21262 1.22289 0.94525 0.90693 1.59590 0.92039 1.19247 0.85355 0.94866 0.80144 1.92735 1.74153 1.97540 1.56873 1.22874 1.00737 0.97147 0.96721 1.22821 0.89723 0.99260 0.97247 1.63813 1.23143 1.19204 1.23967 1.23705 1.01137 0.86524 0.99111 0.90794 0.91871 0.90884 0.91273 0.94644 0.86282 0.93084 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.36 55.43 0.74 -26.37 14 2 C 0.03 0.91 5.30 -17.82 -0.09 0.81 14 3 Si 1.08 24.92 29.90 -169.99 -5.08 19.83 14 4 H -0.29 -6.30 7.11 56.52 0.40 -5.90 14 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 14 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 14 7 C -0.63 -17.96 8.16 -34.44 -0.28 -18.24 14 8 H 0.06 1.70 7.36 -52.48 -0.39 1.31 14 9 C 0.22 5.89 1.16 -90.39 -0.10 5.79 14 10 F -0.23 -6.74 15.62 2.25 0.04 -6.70 14 11 C -0.14 -3.02 6.48 -25.35 -0.16 -3.18 14 12 C 0.04 0.74 7.47 -2.18 -0.02 0.72 14 13 N -0.67 -13.68 7.62 -109.65 -0.84 -14.52 14 14 C 0.02 0.60 5.84 -2.18 -0.01 0.59 14 15 H 0.28 8.55 4.92 -40.82 -0.20 8.35 14 16 H 0.06 1.35 8.04 -51.93 -0.42 0.93 14 17 H 0.07 1.56 7.42 -51.93 -0.39 1.17 14 18 H 0.07 1.14 8.14 -51.93 -0.42 0.71 14 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 14 20 H 0.32 5.55 8.92 -39.29 -0.35 5.20 14 21 H 0.05 1.25 7.85 -51.93 -0.41 0.84 14 22 H 0.08 1.92 6.96 -51.93 -0.36 1.56 14 LS Contribution 190.01 15.07 2.86 2.86 Total: -1.00 -30.95 190.01 -5.10 -36.05 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.15 Total: 2.36 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -0.67 Total: -13.52 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -0.10 Total: -40.89 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.04 Total: -6.70 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.83 kcal Total LS contribution 2.86 Total: 2.86 kcal Total: -30.95 -5.10 -36.05 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018615.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.817 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds