Wall clock time and date at job start Mon Mar 30 2020 02:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99479 * 2 1 4 4 H 1.48500 * 109.47045 * 269.99048 * 3 2 1 5 5 H 1.48492 * 109.47478 * 29.99579 * 3 2 1 6 6 H 1.48503 * 109.46880 * 149.99618 * 3 2 1 7 7 C 1.37872 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00060 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99949 * 180.02562 * 7 2 1 10 10 H 1.08996 * 115.55154 * 34.33287 * 9 7 2 11 11 C 1.53007 * 117.51909 * 248.63024 * 9 7 2 12 12 C 1.53007 * 117.49904 * 180.02562 * 9 7 2 13 13 H 1.08996 * 117.49781 * 0.02562 * 12 9 7 14 14 C 1.52997 * 117.49933 * 215.00095 * 12 9 7 15 15 F 1.39904 * 109.46820 * 65.00030 * 14 12 9 16 16 F 1.39901 * 109.47234 * 305.00434 * 14 12 9 17 17 H 0.97000 * 120.00593 * 0.02562 * 1 2 3 18 18 H 1.08995 * 117.49733 * 145.02845 * 11 9 7 19 19 H 1.09003 * 117.49391 * 0.02562 * 11 9 7 20 20 H 1.09002 * 109.47153 * 185.00011 * 14 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0011 10 1 3.9814 -0.3817 0.5557 11 6 4.2190 -1.6886 -1.2622 12 6 4.2181 -2.5511 0.0011 13 1 3.5929 -3.4439 0.0002 14 6 5.5300 -2.6646 0.7800 15 9 5.2799 -2.4801 2.1441 16 9 6.4238 -1.6854 0.3332 17 1 -0.4851 0.8400 -0.0004 18 1 5.1542 -1.2018 -1.5386 19 1 3.5943 -2.0138 -2.0941 20 1 5.9632 -3.6520 0.6203 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110105.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:58 Heat of formation + Delta-G solvation = -108.782321 kcal Electronic energy + Delta-G solvation = -9001.475407 eV Core-core repulsion = 6833.614910 eV Total energy + Delta-G solvation = -2167.860496 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 162.055 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -49.80502 -47.82659 -38.13300 -34.43681 -29.06420 -27.00659 -22.39731 -21.49726 -19.44121 -18.11087 -17.97111 -17.35378 -16.44728 -14.91601 -14.77956 -14.49966 -14.26984 -14.08103 -13.26256 -13.09690 -12.80108 -11.99754 -11.85581 -11.42606 -11.32606 -10.99148 -10.51058 -8.36528 -6.39369 1.35302 1.36895 1.47210 2.32054 2.69318 3.02860 3.22379 3.49719 3.73583 4.12588 4.39456 4.52265 4.64619 4.92648 5.24014 5.27980 5.57497 6.21354 6.61491 7.23205 8.78849 Molecular weight = 162.06amu Principal moments of inertia in cm(-1) A = 0.068764 B = 0.017341 C = 0.016490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.090093 B = 1614.268647 C = 1697.569640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.501 4.501 8 H 0.038 0.962 9 C -0.039 4.039 10 H 0.071 0.929 11 C -0.172 4.172 12 C -0.229 4.229 13 H 0.123 0.877 14 C 0.293 3.707 15 F -0.221 7.221 16 F -0.217 7.217 17 H 0.270 0.730 18 H 0.103 0.897 19 H 0.092 0.908 20 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.489 -2.830 -0.387 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.538 4.538 8 H 0.056 0.944 9 C -0.058 4.058 10 H 0.089 0.911 11 C -0.210 4.210 12 C -0.248 4.248 13 H 0.141 0.859 14 C 0.240 3.760 15 F -0.203 7.203 16 F -0.198 7.198 17 H 0.079 0.921 18 H 0.121 0.879 19 H 0.110 0.890 20 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.333 -2.692 -0.360 11.654 hybrid contribution -0.260 0.662 0.122 0.722 sum 11.073 -2.030 -0.239 11.260 Atomic orbital electron populations 1.70026 1.08163 1.28555 1.51437 1.25902 0.95535 1.03322 0.93485 0.85644 0.79141 0.78183 0.79529 1.18598 1.20752 1.17711 1.20713 0.89460 0.93376 1.50255 0.94395 1.20293 0.93457 0.93506 0.98542 0.91110 1.23168 1.02679 1.03472 0.91675 1.23440 0.98670 0.98820 1.03908 0.85918 1.21681 0.87543 0.92081 0.74683 1.92938 1.95127 1.96677 1.35531 1.92900 1.70123 1.67681 1.89132 0.92065 0.87888 0.88987 0.82122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.64 13.96 21.45 0.30 -58.34 14 2 C 0.02 0.93 5.47 84.65 0.46 1.40 14 3 Si 0.95 44.74 27.75 68.60 1.90 46.64 14 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 14 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 14 6 H -0.25 -11.37 6.03 99.48 0.60 -10.77 14 7 C -0.50 -28.97 9.76 25.60 0.25 -28.72 14 8 H 0.04 2.40 8.06 -2.91 -0.02 2.38 14 9 C -0.04 -1.87 4.46 -11.54 -0.05 -1.92 14 10 H 0.07 3.45 5.91 -2.39 -0.01 3.44 14 11 C -0.17 -6.71 9.63 30.58 0.29 -6.42 14 12 C -0.23 -8.66 5.84 -10.81 -0.06 -8.72 14 13 H 0.12 4.51 8.14 -2.39 -0.02 4.50 14 14 C 0.29 9.03 5.67 71.98 0.41 9.43 14 15 F -0.22 -7.95 17.34 44.97 0.78 -7.17 14 16 F -0.22 -7.15 15.93 44.97 0.72 -6.44 14 17 H 0.27 15.61 8.31 -92.71 -0.77 14.84 14 18 H 0.10 3.57 7.28 -2.39 -0.02 3.55 14 19 H 0.09 3.59 8.14 -2.39 -0.02 3.58 14 20 H 0.16 3.23 8.14 -2.39 -0.02 3.21 14 Total: -1.00 -64.84 190.03 6.13 -58.72 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 1.13 Total: 1.54 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 1.30 Total: -34.94 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.30 Total: -58.34 kcal Atomic # 9 Polarization: -15.11 SS G_CDS: 1.50 Total: -13.61 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Total: -64.84 6.13 -58.72 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110105.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.067 kcal (2) G-P(sol) polarization free energy of solvation -64.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds