Wall clock time and date at job start Mon Mar 30 2020 02:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08998 * 115.54894 * 34.56130 * 9 7 2 11 11 C 1.53001 * 117.50266 * 248.88526 * 9 7 2 12 12 C 1.52996 * 60.00163 * 252.51053 * 11 9 7 13 13 H 1.08995 * 117.50335 * 252.50698 * 12 11 9 14 14 C 1.53007 * 117.49761 * 107.48874 * 12 11 9 15 15 F 1.39889 * 109.47085 * 111.37618 * 14 12 11 16 16 F 1.39903 * 109.47087 * 231.37892 * 14 12 11 17 17 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 18 18 H 1.08999 * 117.49764 * 0.02562 * 11 9 7 19 19 H 1.09000 * 117.49465 * 144.99539 * 11 9 7 20 20 H 1.08999 * 109.46961 * 351.37502 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.3124 -2.5024 -0.5484 11 6 1.3267 -3.3528 1.2728 12 6 2.0733 -3.7894 0.0107 13 1 1.6755 -4.6419 -0.5398 14 6 3.5975 -3.6560 0.0097 15 9 4.1771 -4.9291 0.0151 16 9 4.0042 -2.9632 -1.1357 17 1 -0.4850 0.8400 0.0004 18 1 1.9211 -2.9703 2.1026 19 1 0.4376 -3.9177 1.5528 20 1 3.9148 -3.1085 0.8973 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110120.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:59 Heat of formation + Delta-G solvation = -93.174217 kcal Electronic energy + Delta-G solvation = -9031.848820 eV Core-core repulsion = 6864.665141 eV Total energy + Delta-G solvation = -2167.183678 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 162.055 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -48.07530 -46.08028 -36.35295 -32.25749 -26.30982 -25.35309 -20.86921 -19.86505 -17.18233 -16.23521 -16.15783 -14.94469 -14.44480 -13.72082 -13.03158 -12.57621 -12.49266 -11.72644 -11.35158 -11.02748 -10.93971 -10.43407 -10.10049 -9.64361 -9.17346 -8.89136 -8.38183 -6.17813 -4.18418 3.27018 3.31650 3.35247 4.32373 4.66842 4.75088 5.14391 5.32111 5.59250 5.99175 6.20537 6.41729 6.56400 6.69992 6.98891 7.47358 7.78597 8.23729 8.82632 9.43182 10.92783 Molecular weight = 162.06amu Principal moments of inertia in cm(-1) A = 0.068849 B = 0.017854 C = 0.015152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.587861 B = 1567.891086 C = 1847.456413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.503 4.503 8 H 0.065 0.935 9 C 0.058 3.942 10 H 0.085 0.915 11 C -0.195 4.195 12 C -0.261 4.261 13 H 0.098 0.902 14 C 0.302 3.698 15 F -0.225 7.225 16 F -0.201 7.201 17 H 0.265 0.735 18 H 0.083 0.917 19 H 0.075 0.925 20 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 -3.527 1.180 5.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.040 3.960 10 H 0.103 0.897 11 C -0.233 4.233 12 C -0.280 4.280 13 H 0.117 0.883 14 C 0.249 3.751 15 F -0.207 7.207 16 F -0.183 7.183 17 H 0.075 0.925 18 H 0.101 0.899 19 H 0.094 0.906 20 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.832 -3.402 1.147 5.251 hybrid contribution 0.472 0.670 -0.030 0.820 sum 4.304 -2.732 1.117 5.219 Atomic orbital electron populations 1.69944 1.06181 1.27304 1.48636 1.25025 0.94877 0.99501 0.94014 0.86548 0.79593 0.82334 0.78979 1.19813 1.21087 1.19988 1.20687 0.92929 0.89141 1.51260 0.91702 1.19979 0.95653 0.87017 0.93389 0.89719 1.23113 1.00651 1.07043 0.92473 1.23244 0.91262 1.05737 1.07735 0.88343 1.21197 0.91589 0.75529 0.86827 1.92883 1.86711 1.43881 1.97176 1.92947 1.91793 1.79191 1.54341 0.92523 0.89860 0.90643 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.25 13.13 55.43 0.73 -24.52 14 2 C 0.07 1.91 5.46 -17.82 -0.10 1.81 14 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 14 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 14 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 14 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 14 7 C -0.50 -13.63 8.41 -34.44 -0.29 -13.92 14 8 H 0.06 1.72 5.99 -52.49 -0.31 1.40 14 9 C 0.06 1.46 5.57 -91.77 -0.51 0.95 14 10 H 0.08 2.27 7.90 -51.93 -0.41 1.86 14 11 C -0.19 -4.20 9.88 -26.73 -0.26 -4.46 14 12 C -0.26 -5.60 5.89 -90.62 -0.53 -6.13 14 13 H 0.10 1.99 8.14 -51.93 -0.42 1.57 14 14 C 0.30 6.18 4.52 37.16 0.17 6.34 14 15 F -0.22 -4.39 17.34 2.25 0.04 -4.35 14 16 F -0.20 -4.53 15.93 2.25 0.04 -4.49 14 17 H 0.27 7.15 8.31 -40.82 -0.34 6.81 14 18 H 0.08 1.74 8.05 -51.93 -0.42 1.33 14 19 H 0.08 1.49 8.14 -51.93 -0.42 1.07 14 20 H 0.10 1.94 7.75 -51.93 -0.40 1.54 14 LS Contribution 191.28 15.07 2.88 2.88 Total: -1.00 -27.95 191.28 -4.39 -32.34 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -1.53 Total: -2.37 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -1.53 Total: -15.41 kcal Atomic # 7 Polarization: -25.25 SS G_CDS: 0.73 Total: -24.52 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 0.07 Total: -8.84 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 2.88 Total: 2.88 kcal Total: -27.95 -4.39 -32.34 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110120.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.836 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds