Wall clock time and date at job start Mon Mar 30 2020 02:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08998 * 115.54894 * 34.56130 * 9 7 2 11 11 C 1.53001 * 117.50266 * 248.88526 * 9 7 2 12 12 C 1.52996 * 60.00163 * 252.51053 * 11 9 7 13 13 H 1.08995 * 117.50335 * 252.50698 * 12 11 9 14 14 C 1.53007 * 117.49761 * 107.48874 * 12 11 9 15 15 F 1.39889 * 109.47085 * 111.37618 * 14 12 11 16 16 F 1.39903 * 109.47087 * 231.37892 * 14 12 11 17 17 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 18 18 H 1.08999 * 117.49764 * 0.02562 * 11 9 7 19 19 H 1.09000 * 117.49465 * 144.99539 * 11 9 7 20 20 H 1.08999 * 109.46961 * 351.37502 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.3124 -2.5024 -0.5484 11 6 1.3267 -3.3528 1.2728 12 6 2.0733 -3.7894 0.0107 13 1 1.6755 -4.6419 -0.5398 14 6 3.5975 -3.6560 0.0097 15 9 4.1771 -4.9291 0.0151 16 9 4.0042 -2.9632 -1.1357 17 1 -0.4850 0.8400 0.0004 18 1 1.9211 -2.9703 2.1026 19 1 0.4376 -3.9177 1.5528 20 1 3.9148 -3.1085 0.8973 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110120.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:59 Heat of formation + Delta-G solvation = -109.088508 kcal Electronic energy + Delta-G solvation = -9032.538915 eV Core-core repulsion = 6864.665141 eV Total energy + Delta-G solvation = -2167.873774 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 162.055 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -49.72498 -47.74458 -38.18182 -34.28715 -28.16639 -27.22594 -22.65400 -21.69827 -19.02539 -17.91701 -17.89974 -16.83938 -16.26757 -15.50705 -14.69262 -14.41800 -14.16695 -13.52401 -13.16749 -12.89088 -12.78658 -12.28599 -11.78059 -11.52982 -11.09949 -10.76191 -10.34556 -8.22205 -6.27868 1.43645 1.45623 1.53527 2.40100 2.87118 3.01156 3.33364 3.55385 3.94587 4.24427 4.47276 4.68057 4.74331 5.00857 5.26421 5.47155 5.73741 6.22667 6.77937 7.36146 8.89313 Molecular weight = 162.06amu Principal moments of inertia in cm(-1) A = 0.068849 B = 0.017854 C = 0.015152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.587861 B = 1567.891086 C = 1847.456413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.016 3.984 10 H 0.056 0.944 11 C -0.174 4.174 12 C -0.244 4.244 13 H 0.111 0.889 14 C 0.303 3.697 15 F -0.217 7.217 16 F -0.214 7.214 17 H 0.266 0.734 18 H 0.092 0.908 19 H 0.094 0.906 20 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 -3.720 1.784 6.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.085 0.915 9 C -0.003 4.003 10 H 0.075 0.925 11 C -0.212 4.212 12 C -0.263 4.263 13 H 0.129 0.871 14 C 0.250 3.750 15 F -0.198 7.198 16 F -0.196 7.196 17 H 0.074 0.926 18 H 0.110 0.890 19 H 0.112 0.888 20 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.816 -3.612 1.755 6.271 hybrid contribution 0.158 0.634 -0.236 0.695 sum 4.974 -2.978 1.519 5.993 Atomic orbital electron populations 1.70059 1.07613 1.28027 1.50308 1.25835 0.95661 1.02889 0.93976 0.85563 0.78369 0.78315 0.79219 1.19667 1.20809 1.18823 1.21003 0.93203 0.90228 1.50748 0.91450 1.19857 0.95648 0.88242 0.96520 0.92540 1.23124 1.01295 1.05000 0.91757 1.23264 0.91878 1.03799 1.07314 0.87064 1.21278 0.90889 0.75920 0.86945 1.92900 1.86444 1.43351 1.97128 1.92924 1.91851 1.79588 1.55217 0.92558 0.88974 0.88793 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.16 13.13 21.45 0.28 -52.88 14 2 C 0.02 0.88 5.46 84.65 0.46 1.35 14 3 Si 0.96 42.58 29.54 68.60 2.03 44.61 14 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 14 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 14 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 14 7 C -0.51 -27.59 8.41 25.60 0.22 -27.38 14 8 H 0.07 3.49 5.99 -2.91 -0.02 3.47 14 9 C 0.02 0.80 5.57 -11.54 -0.06 0.73 14 10 H 0.06 3.09 7.90 -2.39 -0.02 3.07 14 11 C -0.17 -7.12 9.88 30.59 0.30 -6.82 14 12 C -0.24 -9.96 5.89 -10.79 -0.06 -10.03 14 13 H 0.11 4.24 8.14 -2.39 -0.02 4.22 14 14 C 0.30 11.64 4.52 71.98 0.33 11.97 14 15 F -0.22 -7.83 17.34 44.97 0.78 -7.05 14 16 F -0.21 -9.27 15.93 44.97 0.72 -8.56 14 17 H 0.27 14.47 8.31 -92.71 -0.77 13.70 14 18 H 0.09 3.61 8.05 -2.39 -0.02 3.59 14 19 H 0.09 3.48 8.14 -2.39 -0.02 3.46 14 20 H 0.12 4.23 7.75 -2.39 -0.02 4.21 14 Total: -1.00 -57.69 191.28 6.22 -51.47 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 1.24 Total: 2.59 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 1.18 Total: -30.18 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.28 Total: -52.88 kcal Atomic # 9 Polarization: -17.11 SS G_CDS: 1.50 Total: -15.61 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -57.69 6.22 -51.47 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110120.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.616 kcal (2) G-P(sol) polarization free energy of solvation -57.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds