Wall clock time and date at job start Mon Mar 30 2020 02:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00363 * 2 1 4 4 H 1.48501 * 109.47397 * 270.00257 * 3 2 1 5 5 H 1.48507 * 109.46792 * 30.00313 * 3 2 1 6 6 H 1.48497 * 109.47189 * 149.99827 * 3 2 1 7 7 C 1.37876 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99735 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00587 * 359.97438 * 7 2 1 10 10 H 1.08999 * 115.55804 * 325.70810 * 9 7 2 11 11 C 1.53002 * 117.50044 * 111.38973 * 9 7 2 12 12 C 1.53000 * 60.02940 * 107.50594 * 11 9 7 13 13 H 1.08999 * 117.49959 * 252.49451 * 12 11 9 14 14 C 1.53003 * 117.49792 * 107.48056 * 12 11 9 15 15 F 1.39908 * 109.47064 * 231.39349 * 14 12 11 16 16 F 1.39902 * 109.47051 * 351.38699 * 14 12 11 17 17 H 0.97002 * 119.99533 * 359.97438 * 1 2 3 18 18 H 1.09002 * 117.49918 * 0.02562 * 11 9 7 19 19 H 1.09002 * 117.49754 * 215.00777 * 11 9 7 20 20 H 1.08998 * 109.47616 * 111.39176 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.3125 -2.5004 0.5538 11 6 1.3259 -3.3582 -1.2644 12 6 2.0731 -3.7904 -0.0011 13 1 3.1590 -3.6960 -0.0015 14 6 1.5145 -4.9838 0.7766 15 9 1.3722 -4.6367 2.1244 16 9 0.2671 -5.3393 0.2525 17 1 -0.4849 0.8401 0.0004 18 1 1.9206 -2.9796 -2.0958 19 1 0.4366 -3.9243 -1.5417 20 1 2.1993 -5.8273 0.6889 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110133.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:00 Heat of formation + Delta-G solvation = -92.383664 kcal Electronic energy + Delta-G solvation = -8950.582629 eV Core-core repulsion = 6783.433231 eV Total energy + Delta-G solvation = -2167.149397 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 162.055 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -48.23157 -46.24251 -36.09944 -32.24158 -26.91092 -25.07612 -20.60944 -19.78798 -17.26825 -16.39598 -16.14558 -15.60240 -14.54012 -13.29245 -12.97099 -12.69135 -12.53460 -11.57730 -11.51780 -11.03866 -10.89390 -10.45287 -10.27518 -9.54347 -9.17381 -8.86239 -8.32519 -6.13587 -4.14662 3.26256 3.32920 3.36524 4.33570 4.50651 4.74739 5.10447 5.23779 5.36526 5.88952 6.26666 6.42616 6.64405 6.84939 7.07399 7.56003 7.82674 8.30886 8.86617 9.45907 10.96978 Molecular weight = 162.06amu Principal moments of inertia in cm(-1) A = 0.089313 B = 0.014273 C = 0.013999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.430055 B = 1961.263135 C = 1999.628386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.067 3.933 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.057 3.943 10 H 0.082 0.918 11 C -0.191 4.191 12 C -0.268 4.268 13 H 0.111 0.889 14 C 0.295 3.705 15 F -0.209 7.209 16 F -0.212 7.212 17 H 0.265 0.735 18 H 0.084 0.916 19 H 0.078 0.922 20 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 -5.991 0.086 6.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.039 3.961 10 H 0.100 0.900 11 C -0.229 4.229 12 C -0.287 4.287 13 H 0.129 0.871 14 C 0.242 3.758 15 F -0.191 7.191 16 F -0.193 7.193 17 H 0.074 0.926 18 H 0.102 0.898 19 H 0.096 0.904 20 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.905 -5.859 0.117 6.541 hybrid contribution 0.400 0.737 -0.010 0.839 sum 3.306 -5.123 0.107 6.098 Atomic orbital electron populations 1.69972 1.06176 1.27130 1.48628 1.25058 0.94921 0.99505 0.94178 0.86460 0.79825 0.82696 0.78250 1.20436 1.20960 1.19645 1.20644 0.92666 0.89212 1.51237 0.92083 1.19969 0.95631 0.86994 0.93550 0.89983 1.23067 1.00600 1.06878 0.92357 1.23461 0.99815 0.99870 1.05588 0.87096 1.21221 0.81420 0.97391 0.75806 1.92953 1.96291 1.94001 1.35840 1.92907 1.46741 1.93060 1.86612 0.92576 0.89756 0.90386 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.06 13.13 55.43 0.73 -25.33 14 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 14 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 14 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 14 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 14 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 14 7 C -0.50 -14.07 9.20 -34.44 -0.32 -14.38 14 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 14 9 C 0.06 1.50 5.23 -91.74 -0.48 1.02 14 10 H 0.08 2.38 7.90 -51.93 -0.41 1.97 14 11 C -0.19 -4.34 9.62 -26.73 -0.26 -4.60 14 12 C -0.27 -5.73 5.87 -90.58 -0.53 -6.26 14 13 H 0.11 2.23 8.14 -51.93 -0.42 1.80 14 14 C 0.30 5.51 5.67 37.16 0.21 5.72 14 15 F -0.21 -4.32 17.29 2.25 0.04 -4.28 14 16 F -0.21 -4.23 15.91 2.25 0.04 -4.19 14 17 H 0.26 7.31 8.31 -40.82 -0.34 6.97 14 18 H 0.08 1.87 8.14 -51.93 -0.42 1.44 14 19 H 0.08 1.70 7.22 -51.93 -0.37 1.33 14 20 H 0.10 1.37 8.14 -51.93 -0.42 0.95 14 LS Contribution 193.91 15.07 2.92 2.92 Total: -1.00 -29.44 193.91 -4.37 -33.81 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -1.60 Total: -2.40 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -1.47 Total: -16.70 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.73 Total: -25.33 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 2.92 Total: 2.92 kcal Total: -29.44 -4.37 -33.81 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110133.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.577 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds