Wall clock time and date at job start Mon Mar 30 2020 02:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 F 1.39902 * 112.49462 * 50.05108 * 9 7 2 11 11 C 1.53044 * 113.14933 * 280.26656 * 9 7 2 12 12 S 1.81497 * 89.86107 * 211.86656 * 11 9 7 13 13 C 1.53046 * 113.15008 * 179.83999 * 9 7 2 14 14 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 15 15 H 1.08994 * 113.14931 * 327.11720 * 11 9 7 16 16 H 1.09004 * 113.14797 * 96.59543 * 11 9 7 17 17 H 1.09001 * 113.14329 * 263.40424 * 13 9 7 18 18 H 1.08995 * 113.14960 * 32.84497 * 13 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 9 4.0427 -0.3670 1.0013 11 6 4.1190 -0.9393 -1.3757 12 16 5.5328 -1.9921 -0.9433 13 6 4.1132 -2.6013 0.0082 14 1 -0.4849 0.8400 0.0004 15 1 3.5170 -1.3432 -2.1896 16 1 4.3940 0.1030 -1.5372 17 1 4.3834 -2.9501 1.0050 18 1 3.5098 -3.3263 -0.5379 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163943.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:15 Heat of formation + Delta-G solvation = -38.418722 kcal Electronic energy + Delta-G solvation = -7564.121270 eV Core-core repulsion = 5829.692050 eV Total energy + Delta-G solvation = -1734.429220 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 162.021 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -48.52493 -36.67938 -34.30470 -27.99406 -27.34170 -21.93398 -19.39913 -17.66082 -16.88346 -16.42757 -15.95899 -15.37954 -14.71516 -14.15602 -13.77049 -13.23041 -12.98623 -12.58925 -12.16320 -11.92262 -10.96409 -10.94319 -10.60010 -8.83222 -8.47278 -6.64727 0.76415 0.97246 1.32007 1.41351 1.56903 2.29178 2.85926 3.52720 3.62698 4.05571 4.41389 4.54856 4.69256 4.92410 5.33589 6.06414 6.46638 7.10835 8.65416 Molecular weight = 162.02amu Principal moments of inertia in cm(-1) A = 0.082926 B = 0.023944 C = 0.021549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.568713 B = 1169.112095 C = 1299.058611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.902 3.098 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.218 1.218 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.197 3.803 10 F -0.206 7.206 11 C -0.087 4.087 12 S -0.344 6.344 13 C -0.068 4.068 14 H 0.274 0.726 15 H 0.127 0.873 16 H 0.088 0.912 17 H 0.104 0.896 18 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -0.737 -1.507 6.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.158 4.158 3 Si 0.725 3.275 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.140 1.140 7 C -0.583 4.583 8 H 0.090 0.910 9 C 0.176 3.824 10 F -0.186 7.186 11 C -0.235 4.235 12 S -0.118 6.118 13 C -0.216 4.216 14 H 0.083 0.917 15 H 0.145 0.855 16 H 0.107 0.893 17 H 0.122 0.878 18 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.008 -0.850 -1.745 8.240 hybrid contribution -1.122 0.943 0.215 1.482 sum 6.886 0.093 -1.529 7.054 Atomic orbital electron populations 1.69981 1.07910 1.28924 1.48465 1.25652 0.95362 1.02760 0.92036 0.86709 0.81937 0.78917 0.79913 1.18927 1.21580 1.13957 1.21059 0.87852 0.95069 1.54274 0.91042 1.19337 0.93393 0.86537 0.83114 1.92770 1.88361 1.73585 1.63918 1.25555 0.92360 1.02301 1.03318 1.88455 1.17370 1.45361 1.60636 1.24988 0.92179 1.01082 1.03360 0.91673 0.85461 0.89321 0.87769 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.02 13.96 21.45 0.30 -52.72 13 2 C 0.05 2.46 5.47 84.66 0.46 2.92 13 3 Si 0.90 41.35 26.01 68.60 1.78 43.13 13 4 H -0.26 -11.45 7.11 99.48 0.71 -10.75 13 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 13 6 H -0.22 -9.76 5.04 99.48 0.50 -9.26 13 7 C -0.54 -28.28 9.18 25.60 0.24 -28.05 13 8 H 0.07 3.97 8.06 -2.91 -0.02 3.94 13 9 C 0.20 8.71 1.00 -11.51 -0.01 8.70 13 10 F -0.21 -9.67 13.32 44.97 0.60 -9.07 13 11 C -0.09 -3.40 6.61 72.00 0.48 -2.93 13 12 S -0.34 -12.82 24.65 -56.49 -1.39 -14.21 13 13 C -0.07 -2.52 7.36 72.00 0.53 -1.99 13 14 H 0.27 14.85 8.31 -92.71 -0.77 14.08 13 15 H 0.13 4.68 8.11 -2.39 -0.02 4.66 13 16 H 0.09 3.39 7.34 -2.38 -0.02 3.37 13 17 H 0.10 3.60 8.14 -2.39 -0.02 3.58 13 18 H 0.13 4.34 8.11 -2.39 -0.02 4.32 13 Total: -1.00 -56.88 174.89 4.03 -52.85 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: 1.05 Total: 1.37 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 1.69 Total: -21.35 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.30 Total: -52.72 kcal Atomic # 9 Polarization: -9.67 SS G_CDS: 0.60 Total: -9.07 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.78 Total: 43.13 kcal Atomic # 16 Polarization: -12.82 SS G_CDS: -1.39 Total: -14.21 kcal Total: -56.88 4.03 -52.85 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163943.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.431 kcal (2) G-P(sol) polarization free energy of solvation -56.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds