Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.53778 * 113.61142 * 278.86480 * 9 7 2 11 11 C 1.53954 * 87.01791 * 220.04461 * 10 9 7 12 12 C 1.52999 * 113.53997 * 270.81066 * 11 10 9 13 13 F 1.39904 * 109.47318 * 277.49629 * 12 11 10 14 14 C 1.53773 * 113.61491 * 181.25681 * 9 7 2 15 15 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 16 16 H 1.09004 * 112.84797 * 50.05466 * 9 7 2 17 17 H 1.08998 * 113.61884 * 334.56323 * 10 9 7 18 18 H 1.09003 * 113.61403 * 105.47074 * 10 9 7 19 19 H 1.09001 * 113.74248 * 139.94473 * 11 10 9 20 20 H 1.08999 * 109.46934 * 37.49505 * 12 11 10 21 21 H 1.08997 * 109.47319 * 157.49158 * 12 11 10 22 22 H 1.09007 * 113.61332 * 254.52893 * 14 9 7 23 23 H 1.08997 * 113.61794 * 25.43103 * 14 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.1281 -0.9771 -1.3909 11 6 5.1744 -2.0383 -1.0044 12 6 6.4076 -1.4563 -0.3106 13 9 7.2985 -0.9701 -1.2735 14 6 4.1277 -2.6025 -0.0292 15 1 -0.4850 0.8400 -0.0004 16 1 3.9346 -0.5488 0.7713 17 1 3.4770 -1.2838 -2.2095 18 1 4.5472 0.0192 -1.5325 19 1 5.4278 -2.7207 -1.8158 20 1 6.1039 -0.6422 0.3474 21 1 6.8957 -2.2346 0.2759 22 1 4.5463 -2.9167 0.9269 23 1 3.4764 -3.3545 -0.4748 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261198843.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -64.928210 kcal Electronic energy + Delta-G solvation = -8716.328922 eV Core-core repulsion = 6864.286440 eV Total energy + Delta-G solvation = -1852.042483 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.080 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -48.50690 -39.70909 -34.53886 -30.23247 -27.05446 -26.40570 -23.21085 -19.62017 -19.12651 -17.09120 -16.62692 -16.39608 -16.15105 -15.02302 -14.66664 -14.30784 -13.38249 -13.15941 -13.02991 -12.50670 -11.90964 -11.85337 -11.65210 -11.16646 -10.94925 -10.70615 -10.57627 -8.28542 -6.31796 1.35531 1.35913 1.46175 2.35845 3.05519 3.60268 3.68331 3.93810 4.22317 4.37767 4.42266 4.60853 4.80929 4.94661 5.07222 5.18376 5.24213 5.49814 5.70619 5.78348 6.34228 6.74335 7.34194 8.88353 Molecular weight = 158.08amu Principal moments of inertia in cm(-1) A = 0.074117 B = 0.018245 C = 0.015629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.691476 B = 1534.286473 C = 1791.129705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.010 3.990 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.240 1.240 7 C -0.512 4.512 8 H 0.032 0.968 9 C -0.023 4.023 10 C -0.144 4.144 11 C -0.136 4.136 12 C 0.079 3.921 13 F -0.232 7.232 14 C -0.109 4.109 15 H 0.265 0.735 16 H 0.056 0.944 17 H 0.064 0.936 18 H 0.047 0.953 19 H 0.089 0.911 20 H 0.076 0.924 21 H 0.107 0.893 22 H 0.078 0.922 23 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.398 -1.154 -0.004 12.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.187 4.187 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.164 1.164 7 C -0.550 4.550 8 H 0.050 0.950 9 C -0.042 4.042 10 C -0.182 4.182 11 C -0.155 4.155 12 C 0.024 3.976 13 F -0.214 7.214 14 C -0.146 4.146 15 H 0.074 0.926 16 H 0.074 0.926 17 H 0.083 0.917 18 H 0.066 0.934 19 H 0.107 0.893 20 H 0.094 0.906 21 H 0.125 0.875 22 H 0.097 0.903 23 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.272 -1.037 -0.018 12.316 hybrid contribution -0.459 0.763 -0.210 0.914 sum 11.814 -0.275 -0.228 11.819 Atomic orbital electron populations 1.70067 1.08320 1.27982 1.53145 1.25909 0.95364 1.03190 0.94209 0.85813 0.79835 0.78775 0.79122 1.19608 1.21430 1.16374 1.21353 0.91602 0.92760 1.49245 0.94983 1.20602 0.93419 0.96091 0.94102 1.23236 0.97586 0.97571 0.99800 1.22903 0.93966 0.98752 0.99892 1.21940 0.87151 1.00126 0.88339 1.92706 1.70633 1.90329 1.67696 1.22717 0.96187 0.96950 0.98795 0.92650 0.92632 0.91715 0.93394 0.89278 0.90612 0.87529 0.90342 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.23 13.96 21.45 0.30 -59.93 14 2 C 0.01 0.58 5.47 84.65 0.46 1.04 14 3 Si 0.94 44.41 26.87 68.60 1.84 46.26 14 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 14 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 14 6 H -0.24 -10.30 6.29 99.48 0.63 -9.67 14 7 C -0.51 -29.14 9.31 25.60 0.24 -28.90 14 8 H 0.03 2.02 8.06 -2.91 -0.02 2.00 14 9 C -0.02 -1.05 2.38 -11.02 -0.03 -1.08 14 10 C -0.14 -5.83 6.39 31.18 0.20 -5.63 14 11 C -0.14 -4.39 4.29 -10.21 -0.04 -4.43 14 12 C 0.08 2.15 7.23 71.98 0.52 2.67 14 13 F -0.23 -7.11 17.36 44.97 0.78 -6.33 14 14 C -0.11 -3.93 7.22 31.12 0.22 -3.71 14 15 H 0.26 15.64 8.31 -92.71 -0.77 14.87 14 16 H 0.06 2.42 6.19 -2.39 -0.01 2.41 14 17 H 0.06 2.79 8.09 -2.39 -0.02 2.77 14 18 H 0.05 1.89 7.82 -2.39 -0.02 1.87 14 19 H 0.09 2.63 8.14 -2.39 -0.02 2.61 14 20 H 0.08 2.09 7.34 -2.39 -0.02 2.07 14 21 H 0.11 2.19 8.14 -2.39 -0.02 2.17 14 22 H 0.08 2.40 8.10 -2.38 -0.02 2.38 14 23 H 0.07 2.63 8.09 -2.39 -0.02 2.61 14 Total: -1.00 -64.08 199.27 5.60 -58.49 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 1.10 Total: 1.56 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 1.58 Total: -40.04 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.30 Total: -59.93 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.78 Total: -6.33 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.84 Total: 46.26 kcal Total: -64.08 5.60 -58.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261198843.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.440 kcal (2) G-P(sol) polarization free energy of solvation -64.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds