Wall clock time and date at job start Mon Mar 30 2020 01:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.50752 * 298.71012 * 9 7 2 11 11 C 1.54089 * 110.56667 * 175.81360 * 9 7 2 12 12 O 1.45703 * 104.00961 * 241.42811 * 11 9 7 13 13 C 1.33772 * 109.47326 * 359.97438 * 12 11 9 14 14 O 1.21515 * 123.06839 * 180.02562 * 13 12 11 15 15 N 1.34000 * 113.85910 * 359.97438 * 13 12 11 16 16 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 17 17 H 1.09005 * 110.52057 * 0.05792 * 11 9 7 18 18 H 1.08991 * 110.52610 * 122.79461 * 11 9 7 19 19 H 0.97004 * 125.55892 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6357 -2.5848 0.8951 11 6 2.2264 -3.6874 -0.1065 12 8 1.8490 -4.3435 -1.3515 13 6 0.8289 -3.6840 -1.9117 14 8 0.3178 -4.0213 -2.9613 15 7 0.4214 -2.6181 -1.2093 16 1 -0.4850 0.8401 0.0004 17 1 3.2560 -3.3331 -0.1581 18 1 2.0963 -4.3650 0.7372 19 1 -0.3023 -2.0219 -1.4578 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251925.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:09 Heat of formation + Delta-G solvation = -85.671523 kcal Electronic energy + Delta-G solvation = -8607.966271 eV Core-core repulsion = 6704.537069 eV Total energy + Delta-G solvation = -1903.429202 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 157.053 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -40.27934 -36.09154 -34.24935 -32.03408 -28.83029 -25.26895 -21.66250 -20.92332 -17.39114 -16.77030 -15.75395 -15.19295 -14.61524 -13.41911 -13.02950 -12.93445 -12.45403 -11.87421 -11.10007 -10.86734 -10.39092 -10.06853 -9.68979 -9.59261 -8.85912 -7.90001 -6.42685 -4.54634 3.12064 3.21025 3.23867 3.81118 3.95163 4.15586 4.73297 5.16222 5.61262 5.80312 6.08140 6.62816 6.96489 7.52256 7.70397 8.11445 8.37986 8.63848 9.17724 9.33071 10.65457 Molecular weight = 157.05amu Principal moments of inertia in cm(-1) A = 0.088407 B = 0.018563 C = 0.017138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.640065 B = 1508.035107 C = 1633.385353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.217 3.783 10 H 0.060 0.940 11 C 0.044 3.956 12 O -0.351 6.351 13 C 0.631 3.369 14 O -0.575 6.575 15 N -0.701 5.701 16 H 0.270 0.730 17 H 0.095 0.905 18 H 0.082 0.918 19 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 -0.948 2.806 4.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.580 4.580 8 H 0.089 0.911 9 C 0.115 3.885 10 H 0.078 0.922 11 C -0.031 4.031 12 O -0.262 6.262 13 C 0.383 3.617 14 O -0.465 6.465 15 N -0.370 5.370 16 H 0.080 0.920 17 H 0.113 0.887 18 H 0.101 0.899 19 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 2.607 -1.309 2.284 3.705 hybrid contribution 0.102 1.374 0.083 1.380 sum 2.710 0.065 2.366 3.598 Atomic orbital electron populations 1.69826 1.06212 1.28031 1.48090 1.25089 0.95024 0.99973 0.92988 0.86350 0.79843 0.82061 0.78393 1.20190 1.19557 1.20891 1.21359 0.93410 0.89722 1.53501 0.91105 1.20035 0.88803 0.93400 0.86285 0.92186 1.24493 1.01331 0.94035 0.83221 1.87054 1.48712 1.52285 1.38118 1.18725 0.79183 0.80222 0.83598 1.90919 1.60096 1.72902 1.22617 1.46673 1.37462 1.27765 1.25118 0.91989 0.88722 0.89948 0.72489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.92 12.30 55.43 0.68 -22.24 13 2 C 0.07 1.88 5.41 -17.82 -0.10 1.78 13 3 Si 0.91 19.60 29.54 -169.99 -5.02 14.58 13 4 H -0.28 -5.86 7.11 56.52 0.40 -5.46 13 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 13 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 13 7 C -0.54 -13.37 8.80 -34.44 -0.30 -13.68 13 8 H 0.07 1.69 7.39 -52.49 -0.39 1.30 13 9 C 0.22 4.96 3.59 -68.19 -0.25 4.71 13 10 H 0.06 1.39 8.14 -51.93 -0.42 0.96 13 11 C 0.04 0.86 7.87 37.73 0.30 1.15 13 12 O -0.35 -7.91 11.09 -37.83 -0.42 -8.33 13 13 C 0.63 15.62 9.16 53.71 0.49 16.11 13 14 O -0.57 -15.66 18.04 -19.12 -0.34 -16.00 13 15 N -0.70 -16.86 5.78 -59.36 -0.34 -17.20 13 16 H 0.27 6.68 8.31 -40.82 -0.34 6.35 13 17 H 0.09 1.71 7.46 -51.93 -0.39 1.32 13 18 H 0.08 1.31 8.14 -51.93 -0.42 0.89 13 19 H 0.43 10.60 8.13 -40.82 -0.33 10.27 13 LS Contribution 180.46 15.07 2.72 2.72 Total: -1.00 -28.33 180.46 -3.67 -32.00 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -1.09 Total: 4.40 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 0.14 Total: 10.08 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.34 Total: -39.44 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.76 Total: -24.33 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 2.72 Total: 2.72 kcal Total: -28.33 -3.67 -32.00 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251925.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.672 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds