Wall clock time and date at job start Mon Mar 30 2020 01:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.50752 * 298.71012 * 9 7 2 11 11 C 1.54089 * 110.56667 * 175.81360 * 9 7 2 12 12 O 1.45703 * 104.00961 * 241.42811 * 11 9 7 13 13 C 1.33772 * 109.47326 * 359.97438 * 12 11 9 14 14 O 1.21515 * 123.06839 * 180.02562 * 13 12 11 15 15 N 1.34000 * 113.85910 * 359.97438 * 13 12 11 16 16 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 17 17 H 1.09005 * 110.52057 * 0.05792 * 11 9 7 18 18 H 1.08991 * 110.52610 * 122.79461 * 11 9 7 19 19 H 0.97004 * 125.55892 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6357 -2.5848 0.8951 11 6 2.2264 -3.6874 -0.1065 12 8 1.8490 -4.3435 -1.3515 13 6 0.8289 -3.6840 -1.9117 14 8 0.3178 -4.0213 -2.9613 15 7 0.4214 -2.6181 -1.2093 16 1 -0.4850 0.8401 0.0004 17 1 3.2560 -3.3331 -0.1581 18 1 2.0963 -4.3650 0.7372 19 1 -0.3023 -2.0219 -1.4578 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261251925.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:09 Heat of formation + Delta-G solvation = -106.852085 kcal Electronic energy + Delta-G solvation = -8608.884729 eV Core-core repulsion = 6704.537069 eV Total energy + Delta-G solvation = -1904.347660 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 157.053 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -42.12092 -38.05825 -36.09799 -33.94008 -30.63395 -27.07714 -23.48182 -22.79529 -19.27000 -18.59820 -17.59345 -17.09915 -16.41769 -15.31468 -14.81208 -14.74691 -14.20072 -13.66575 -12.81991 -12.61243 -12.27733 -11.82794 -11.59203 -11.40674 -10.75381 -9.80687 -8.31785 -6.49265 1.42538 1.46997 1.55325 1.87928 2.12469 2.36271 2.91595 3.30259 3.92666 4.34702 4.50736 4.88600 5.17572 5.61626 5.83819 6.17830 6.49983 6.76869 7.26161 7.37758 8.75661 Molecular weight = 157.05amu Principal moments of inertia in cm(-1) A = 0.088407 B = 0.018563 C = 0.017138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.640065 B = 1508.035107 C = 1633.385353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.288 1.288 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.207 3.793 10 H 0.056 0.944 11 C 0.049 3.951 12 O -0.352 6.352 13 C 0.630 3.370 14 O -0.606 6.606 15 N -0.700 5.700 16 H 0.271 0.729 17 H 0.112 0.888 18 H 0.124 0.876 19 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 -0.821 3.467 5.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.173 4.173 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.214 1.214 7 C -0.594 4.594 8 H 0.096 0.904 9 C 0.106 3.894 10 H 0.074 0.926 11 C -0.025 4.025 12 O -0.262 6.262 13 C 0.383 3.617 14 O -0.499 6.499 15 N -0.367 5.367 16 H 0.080 0.920 17 H 0.130 0.870 18 H 0.142 0.858 19 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.668 -1.191 2.974 4.870 hybrid contribution -0.211 1.324 -0.077 1.343 sum 3.457 0.133 2.897 4.512 Atomic orbital electron populations 1.69912 1.07320 1.28656 1.48922 1.25822 0.95729 1.02949 0.92811 0.85419 0.78474 0.78411 0.78530 1.19357 1.19398 1.21398 1.21719 0.93963 0.90613 1.53103 0.90442 1.20169 0.89264 0.94461 0.85555 0.92626 1.24755 1.01103 0.93430 0.83172 1.87043 1.47725 1.52128 1.39300 1.18768 0.79426 0.80248 0.83297 1.90885 1.61298 1.73703 1.24019 1.46717 1.37276 1.27350 1.25405 0.92014 0.86999 0.85797 0.73121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.68 12.30 21.45 0.26 -46.42 13 2 C 0.03 1.45 5.41 84.66 0.46 1.91 13 3 Si 0.97 39.25 29.54 68.60 2.03 41.27 13 4 H -0.27 -10.49 7.11 99.48 0.71 -9.78 13 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 13 6 H -0.29 -11.84 7.11 99.48 0.71 -11.13 13 7 C -0.56 -26.51 8.80 25.60 0.23 -26.28 13 8 H 0.08 3.52 7.39 -2.91 -0.02 3.50 13 9 C 0.21 9.13 3.59 44.50 0.16 9.29 13 10 H 0.06 2.50 8.14 -2.39 -0.02 2.48 13 11 C 0.05 1.75 7.87 72.35 0.57 2.32 13 12 O -0.35 -15.10 11.09 -47.32 -0.52 -15.62 13 13 C 0.63 30.61 9.16 129.91 1.19 31.80 13 14 O -0.61 -32.85 18.04 19.64 0.35 -32.50 13 15 N -0.70 -33.15 5.78 -573.43 -3.31 -36.46 13 16 H 0.27 13.28 8.31 -92.71 -0.77 12.51 13 17 H 0.11 3.63 7.46 -2.38 -0.02 3.61 13 18 H 0.12 3.42 8.14 -2.39 -0.02 3.40 13 19 H 0.43 20.96 8.13 -92.71 -0.75 20.21 13 Total: -1.00 -57.88 180.46 1.93 -55.96 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.52 Total: 14.72 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 2.60 Total: 19.05 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -3.05 Total: -82.88 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -0.17 Total: -48.12 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.27 kcal Total: -57.88 1.93 -55.96 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251925.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.894 kcal (2) G-P(sol) polarization free energy of solvation -57.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds