Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46902 * 112.49823 * 50.21447 * 9 7 2 11 11 C 1.53045 * 113.15404 * 280.37664 * 9 7 2 12 12 S 1.81423 * 89.89070 * 211.85475 * 11 9 7 13 13 C 1.53039 * 113.15270 * 180.02562 * 9 7 2 14 14 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 15 15 H 1.00896 * 111.00007 * 309.66552 * 10 9 7 16 16 H 1.00898 * 110.99642 * 73.61928 * 10 9 7 17 17 H 1.09002 * 113.14452 * 327.10714 * 11 9 7 18 18 H 1.08998 * 113.15295 * 96.59438 * 11 9 7 19 19 H 1.09003 * 113.14672 * 263.40795 * 13 9 7 20 20 H 1.09004 * 113.14997 * 32.88676 * 13 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 0.2174 -2.5515 -1.0431 11 6 0.7312 -2.8939 1.3837 12 16 0.9339 -4.6454 0.9566 13 6 2.1688 -3.7239 -0.0005 14 1 -0.4850 0.8401 0.0004 15 1 -0.3691 -1.7311 -1.0122 16 1 0.6306 -2.6664 -1.9564 17 1 1.3848 -2.5722 2.1946 18 1 -0.3084 -2.6104 1.5480 19 1 2.3336 -4.1357 -0.9962 20 1 3.0993 -3.5621 0.5437 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261265481.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = 15.618745 kcal Electronic energy + Delta-G solvation = -7277.910530 eV Core-core repulsion = 5794.314995 eV Total energy + Delta-G solvation = -1483.595534 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 159.041 amu Computer time = 0.04 seconds Orbital eigenvalues (eV) -36.50299 -32.10215 -28.75280 -25.51910 -25.11633 -19.28709 -16.77828 -15.12637 -14.82357 -13.98122 -13.89020 -12.76816 -11.85875 -11.63995 -11.25895 -11.13975 -10.89270 -10.37456 -10.34151 -9.55878 -9.03125 -8.65496 -7.27804 -6.66422 -6.16831 -4.40561 2.93126 3.16052 3.20879 3.23817 3.27118 4.22328 4.98290 5.86300 5.92557 6.29435 6.42720 6.57494 6.89552 7.25134 7.63647 7.85456 8.51702 8.87143 9.13492 9.38744 10.75176 Molecular weight = 159.04amu Principal moments of inertia in cm(-1) A = 0.104023 B = 0.018773 C = 0.018007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 269.105760 B = 1491.134009 C = 1554.576607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.071 3.929 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.244 3.756 10 N -0.828 5.828 11 C -0.032 4.032 12 S -0.376 6.376 13 C -0.057 4.057 14 H 0.269 0.731 15 H 0.367 0.633 16 H 0.315 0.685 17 H 0.084 0.916 18 H 0.080 0.920 19 H 0.073 0.927 20 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -0.691 -0.186 2.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.132 4.132 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.149 3.851 10 N -0.363 5.363 11 C -0.181 4.181 12 S -0.151 6.151 13 C -0.206 4.206 14 H 0.080 0.920 15 H 0.189 0.811 16 H 0.124 0.876 17 H 0.102 0.898 18 H 0.099 0.901 19 H 0.092 0.908 20 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.545 -2.563 0.481 3.031 hybrid contribution 1.323 2.763 -0.426 3.093 sum 2.868 0.199 0.055 2.875 Atomic orbital electron populations 1.69509 1.05919 1.27584 1.49491 1.25060 0.94980 0.99524 0.93658 0.86500 0.79561 0.82219 0.78851 1.21077 1.19994 1.20092 1.21624 0.93567 0.90561 1.52434 0.91840 1.18892 0.87265 0.90392 0.88517 1.59139 1.23008 1.49324 1.04850 1.24695 1.04543 0.85619 1.03278 1.88155 1.48506 1.17661 1.60737 1.24560 0.98910 0.96653 1.00429 0.92021 0.81091 0.87566 0.89799 0.90137 0.90809 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.14 11.00 55.43 0.61 -22.53 14 2 C 0.07 1.82 5.38 -17.82 -0.10 1.72 14 3 Si 0.90 19.84 29.54 -169.99 -5.02 14.81 14 4 H -0.29 -6.27 7.11 56.52 0.40 -5.87 14 5 H -0.27 -6.04 7.11 56.52 0.40 -5.64 14 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 14 7 C -0.54 -13.74 8.53 -34.44 -0.29 -14.04 14 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 14 9 C 0.24 5.85 0.99 -132.71 -0.13 5.72 14 10 N -0.83 -19.75 8.97 -8.80 -0.08 -19.83 14 11 C -0.03 -0.77 7.26 37.18 0.27 -0.50 14 12 S -0.38 -8.46 24.54 -107.50 -2.64 -11.09 14 13 C -0.06 -1.22 7.24 37.18 0.27 -0.96 14 14 H 0.27 6.75 8.31 -40.82 -0.34 6.41 14 15 H 0.37 9.31 6.30 -39.29 -0.25 9.06 14 16 H 0.31 7.00 9.06 -39.29 -0.36 6.65 14 17 H 0.08 1.92 8.11 -51.93 -0.42 1.50 14 18 H 0.08 2.00 8.14 -51.93 -0.42 1.58 14 19 H 0.07 1.50 8.14 -51.93 -0.42 1.08 14 20 H 0.09 1.79 8.11 -51.93 -0.42 1.37 14 LS Contribution 188.77 15.07 2.84 2.84 Total: -1.00 -26.05 188.77 -6.10 -32.16 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -1.84 Total: 11.68 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 0.02 Total: -8.05 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.53 Total: -42.35 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -2.64 Total: -11.09 kcal Total LS contribution 2.84 Total: 2.84 kcal Total: -26.05 -6.10 -32.16 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265481.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.774 kcal (2) G-P(sol) polarization free energy of solvation -26.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.04 seconds