Wall clock time and date at job start Mon Mar 30 2020 01:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47119 * 2 1 4 4 F 1.39903 * 109.46631 * 119.99331 * 2 1 3 5 5 C 1.52995 * 109.47326 * 239.99445 * 2 1 3 6 6 C 1.50700 * 115.55977 * 319.69191 * 5 2 1 7 7 H 1.08001 * 120.00511 * 93.90908 * 6 5 2 8 8 C 1.37884 * 119.99769 * 273.90434 * 6 5 2 9 9 N 1.31515 * 120.00029 * 7.46998 * 8 6 5 10 10 Si 1.86804 * 120.00080 * 187.47312 * 8 6 5 11 11 H 1.48501 * 109.46966 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47177 * 119.99565 * 10 8 6 13 13 H 1.48498 * 109.47029 * 239.99858 * 10 8 6 14 14 C 1.52993 * 117.50196 * 173.99970 * 5 2 1 15 15 C 1.52995 * 117.49821 * 105.37365 * 5 2 1 16 16 H 1.08995 * 109.47252 * 186.81111 * 1 2 3 17 17 H 1.09004 * 109.47523 * 306.80884 * 1 2 3 18 18 H 1.09005 * 109.47066 * 66.80526 * 1 2 3 19 19 H 0.96993 * 119.99939 * 174.98415 * 9 8 6 20 20 H 1.08996 * 117.50180 * 145.01889 * 14 5 2 21 21 H 1.09006 * 117.49845 * 0.02562 * 14 5 2 22 22 H 1.09002 * 117.50235 * 0.02562 * 15 5 2 23 23 H 1.09001 * 117.51991 * 214.96720 * 15 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9962 -0.6594 1.1424 5 6 2.0400 -0.7213 -1.2491 6 6 1.2793 -1.9623 -1.6394 7 1 0.4766 -1.8997 -2.3592 8 6 1.6083 -3.1778 -1.0777 9 7 2.4825 -3.2338 -0.0967 10 14 0.8123 -4.7450 -1.7100 11 1 -0.1292 -4.4133 -2.8094 12 1 1.8628 -5.6638 -2.2176 13 1 0.0702 -5.4038 -0.6052 14 6 3.5479 -0.7066 -1.5072 15 6 2.6147 0.1388 -2.3764 16 1 -0.3633 -1.0204 0.1219 17 1 -0.3634 0.6157 0.8228 18 1 -0.3633 0.4048 -0.9446 19 1 2.6600 -4.0777 0.3471 20 1 3.9899 -1.5945 -1.9593 21 1 4.1768 -0.1833 -0.7869 22 1 2.6299 1.2185 -2.2280 23 1 2.4431 -0.1928 -3.4004 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261316375.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:44 Heat of formation + Delta-G solvation = -53.819833 kcal Electronic energy + Delta-G solvation = -9010.890288 eV Core-core repulsion = 7159.329501 eV Total energy + Delta-G solvation = -1851.560787 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.080 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -47.93974 -38.26410 -33.97066 -31.91437 -27.48161 -24.36531 -22.89591 -21.02709 -18.01194 -16.89933 -16.37086 -16.14907 -15.47565 -14.92296 -14.10480 -13.41530 -12.92968 -12.87121 -12.83638 -12.59703 -12.20988 -12.06688 -11.68313 -11.02449 -10.69241 -10.36410 -10.05067 -8.02975 -6.17002 1.40334 1.43291 1.53448 2.43977 3.21683 3.41279 4.06211 4.24435 4.34888 4.44919 4.62366 4.80874 4.97812 4.98749 5.22101 5.45930 5.52649 5.62564 5.67066 5.79137 6.39271 6.88162 7.49993 9.02816 Molecular weight = 158.08amu Principal moments of inertia in cm(-1) A = 0.055082 B = 0.023975 C = 0.021932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.214077 B = 1167.612089 C = 1276.354365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.117 3.883 3 H 0.071 0.929 4 F -0.229 7.229 5 C -0.021 4.021 6 C -0.509 4.509 7 H 0.057 0.943 8 C 0.024 3.976 9 N -0.893 5.893 10 Si 0.946 3.054 11 H -0.264 1.264 12 H -0.284 1.284 13 H -0.283 1.283 14 C -0.166 4.166 15 C -0.172 4.172 16 H 0.046 0.954 17 H 0.064 0.936 18 H 0.076 0.924 19 H 0.256 0.744 20 H 0.056 0.944 21 H 0.069 0.931 22 H 0.100 0.900 23 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 4.826 -1.730 5.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.080 3.920 3 H 0.089 0.911 4 F -0.210 7.210 5 C -0.021 4.021 6 C -0.547 4.547 7 H 0.075 0.925 8 C -0.177 4.177 9 N -0.529 5.529 10 Si 0.772 3.228 11 H -0.188 1.188 12 H -0.210 1.210 13 H -0.210 1.210 14 C -0.203 4.203 15 C -0.209 4.209 16 H 0.065 0.935 17 H 0.083 0.917 18 H 0.095 0.905 19 H 0.065 0.935 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.118 0.882 23 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.226 4.674 -1.621 5.425 hybrid contribution -0.073 -1.171 -0.024 1.174 sum -2.299 3.503 -1.646 4.502 Atomic orbital electron populations 1.22011 0.93957 1.01980 1.02280 1.21384 0.95451 0.93156 0.81973 0.91104 1.92743 1.90621 1.84343 1.53304 1.19649 0.93278 0.96230 0.92966 1.20584 1.17605 0.91146 1.25345 0.92461 1.25727 0.95359 1.01619 0.95036 1.70207 1.34257 1.26092 1.22351 0.85692 0.78367 0.80215 0.78500 1.18836 1.21020 1.20956 1.22357 0.94796 1.00281 1.02881 1.23027 1.05087 0.96705 0.96086 0.93530 0.91721 0.90501 0.93510 0.92500 0.91253 0.88168 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.98 71.98 0.65 -5.08 14 2 C 0.12 5.27 4.01 30.59 0.12 5.39 14 3 H 0.07 2.74 7.95 -2.39 -0.02 2.72 14 4 F -0.23 -12.11 16.50 44.97 0.74 -11.37 14 5 C -0.02 -1.01 1.38 -52.93 -0.07 -1.08 14 6 C -0.51 -27.55 7.39 25.60 0.19 -27.36 14 7 H 0.06 3.05 7.82 -2.91 -0.02 3.03 14 8 C 0.02 1.35 5.38 84.66 0.46 1.80 14 9 N -0.89 -52.75 12.34 21.45 0.26 -52.49 14 10 Si 0.95 43.80 29.55 68.60 2.03 45.83 14 11 H -0.26 -11.72 7.11 99.48 0.71 -11.02 14 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 14 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 14 14 C -0.17 -7.94 9.43 30.59 0.29 -7.65 14 15 C -0.17 -7.06 9.88 30.59 0.30 -6.76 14 16 H 0.05 2.09 7.52 -2.39 -0.02 2.07 14 17 H 0.06 2.15 8.14 -2.38 -0.02 2.13 14 18 H 0.08 2.73 8.14 -2.38 -0.02 2.71 14 19 H 0.26 14.55 8.32 -92.71 -0.77 13.77 14 20 H 0.06 2.96 8.14 -2.39 -0.02 2.94 14 21 H 0.07 3.18 8.14 -2.38 -0.02 3.16 14 22 H 0.10 3.42 8.09 -2.39 -0.02 3.40 14 23 H 0.08 3.37 8.14 -2.39 -0.02 3.35 14 Total: -1.00 -61.27 206.56 6.14 -55.13 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.17 Total: 3.63 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 1.93 Total: -40.73 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.26 Total: -52.49 kcal Atomic # 9 Polarization: -12.11 SS G_CDS: 0.74 Total: -11.37 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -61.27 6.14 -55.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316375.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.309 kcal (2) G-P(sol) polarization free energy of solvation -61.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds