Wall clock time and date at job start Mon Mar 30 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81401 * 102.99936 * 2 1 4 4 C 1.50700 * 115.54678 * 299.12002 * 3 2 1 5 5 H 1.07999 * 119.99891 * 95.16225 * 4 3 2 6 6 C 1.37880 * 119.99944 * 275.15636 * 4 3 2 7 7 N 1.31510 * 119.99754 * 6.13104 * 6 4 3 8 8 Si 1.86798 * 119.99694 * 186.12705 * 6 4 3 9 9 H 1.48503 * 109.47117 * 270.00142 * 8 6 4 10 10 H 1.48503 * 109.47333 * 30.00344 * 8 6 4 11 11 H 1.48497 * 109.46857 * 150.00333 * 8 6 4 12 12 C 1.52997 * 117.49712 * 84.79057 * 3 2 1 13 13 C 1.52997 * 117.49816 * 153.45112 * 3 2 1 14 14 H 1.09000 * 109.47420 * 305.14966 * 1 2 3 15 15 H 1.09008 * 109.46920 * 65.14917 * 1 2 3 16 16 H 1.08996 * 109.47155 * 185.14384 * 1 2 3 17 17 H 0.97005 * 119.99424 * 174.98772 * 7 6 4 18 18 H 1.08999 * 117.49815 * 214.99711 * 12 3 2 19 19 H 1.08993 * 117.50247 * 0.02562 * 12 3 2 20 20 H 1.09005 * 117.49513 * 359.97438 * 13 3 2 21 21 H 1.09004 * 117.50012 * 144.99593 * 13 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.7236 2.5496 -1.1878 5 1 0.7863 3.0829 -1.1284 6 6 2.4641 2.5844 -2.3503 7 7 3.5423 1.8402 -2.4656 8 14 1.9358 3.6884 -3.7615 9 1 1.0209 2.9395 -4.6601 10 1 1.2333 4.8802 -3.2214 11 1 3.1331 4.1232 -4.5247 12 6 2.2609 2.4835 1.3515 13 6 3.5639 2.1828 0.6066 14 1 -0.3634 0.5916 0.8403 15 1 -0.3633 0.4319 -0.9326 16 1 -0.3633 -1.0235 0.0921 17 1 4.0221 1.8090 -3.3081 18 1 1.9260 3.5203 1.3816 19 1 2.0417 1.8925 2.2407 20 1 4.2013 1.3938 1.0060 21 1 4.0862 3.0217 0.1465 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261322263.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:04 Heat of formation + Delta-G solvation = 0.124169 kcal Electronic energy + Delta-G solvation = -6990.449411 eV Core-core repulsion = 5571.607893 eV Total energy + Delta-G solvation = -1418.841518 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 158.046 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -37.75733 -34.09699 -29.55841 -27.75487 -23.03231 -22.37768 -18.70071 -16.86525 -16.44404 -15.69398 -14.93384 -14.12619 -14.05207 -13.32854 -13.24320 -12.86605 -12.43378 -12.21075 -11.91120 -11.28241 -11.03959 -10.41351 -10.07851 -8.36673 -7.98969 -6.30391 1.32795 1.42945 1.48912 1.53178 2.21317 2.38335 3.22404 3.38578 4.47877 4.48867 4.52487 4.59012 4.73118 4.88878 4.99880 5.18250 5.50867 5.62798 6.13968 6.67753 7.33000 8.87989 Molecular weight = 158.05amu Principal moments of inertia in cm(-1) A = 0.060089 B = 0.022729 C = 0.020221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.861588 B = 1231.632820 C = 1384.369251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 S -0.354 6.354 3 C 0.054 3.946 4 C -0.505 4.505 5 H 0.060 0.940 6 C 0.033 3.967 7 N -0.881 5.881 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.264 1.264 11 H -0.281 1.281 12 C -0.164 4.164 13 C -0.132 4.132 14 H 0.073 0.927 15 H 0.060 0.940 16 H 0.104 0.896 17 H 0.264 0.736 18 H 0.092 0.908 19 H 0.095 0.905 20 H 0.072 0.928 21 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 0.849 2.893 4.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 S -0.121 6.121 3 C -0.053 4.053 4 C -0.547 4.547 5 H 0.078 0.922 6 C -0.173 4.173 7 N -0.516 5.516 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.188 1.188 11 H -0.206 1.206 12 C -0.206 4.206 13 C -0.171 4.171 14 H 0.092 0.908 15 H 0.079 0.921 16 H 0.123 0.877 17 H 0.074 0.926 18 H 0.110 0.890 19 H 0.113 0.887 20 H 0.091 0.909 21 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.052 -0.144 2.824 4.161 hybrid contribution -0.740 1.323 -0.927 1.777 sum -3.792 1.179 1.897 4.401 Atomic orbital electron populations 1.22983 0.92948 1.05334 1.04076 1.85995 1.09541 1.19089 1.97458 1.20821 1.01407 0.88747 0.94330 1.20736 1.06493 1.29969 0.97506 0.92205 1.25794 0.94336 0.96268 1.00871 1.70144 1.17713 1.37813 1.25912 0.85545 0.77900 0.79365 0.78860 1.20103 1.18803 1.20616 1.23291 1.01481 1.00945 0.94850 1.22387 0.90506 1.01350 1.02902 0.90781 0.92100 0.87724 0.92638 0.88959 0.88667 0.90946 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.25 10.64 113.37 1.21 -2.04 14 2 S -0.35 -17.09 22.29 -56.49 -1.26 -18.35 14 3 C 0.05 2.73 1.80 -11.54 -0.02 2.71 14 4 C -0.50 -27.26 8.74 25.60 0.22 -27.03 14 5 H 0.06 3.17 7.82 -2.91 -0.02 3.15 14 6 C 0.03 1.80 5.39 84.66 0.46 2.26 14 7 N -0.88 -50.35 12.93 21.45 0.28 -50.08 14 8 Si 0.96 42.22 29.54 68.60 2.03 44.25 14 9 H -0.28 -11.93 7.11 99.48 0.71 -11.23 14 10 H -0.26 -11.17 7.11 99.48 0.71 -10.47 14 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 14 12 C -0.16 -7.00 10.00 30.62 0.31 -6.69 14 13 C -0.13 -6.29 9.52 30.62 0.29 -6.00 14 14 H 0.07 2.59 8.14 -2.39 -0.02 2.57 14 15 H 0.06 2.44 8.14 -2.39 -0.02 2.42 14 16 H 0.10 3.33 8.14 -2.39 -0.02 3.31 14 17 H 0.26 14.35 8.32 -92.70 -0.77 13.58 14 18 H 0.09 3.71 8.14 -2.39 -0.02 3.69 14 19 H 0.10 3.64 8.14 -2.39 -0.02 3.62 14 20 H 0.07 3.38 8.14 -2.38 -0.02 3.36 14 21 H 0.07 3.69 8.14 -2.38 -0.02 3.67 14 Total: -1.00 -59.46 205.31 4.70 -54.76 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.19 Total: 6.22 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 2.46 Total: -36.80 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.28 Total: -50.08 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: -17.09 SS G_CDS: -1.26 Total: -18.35 kcal Total: -59.46 4.70 -54.76 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322263.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.884 kcal (2) G-P(sol) polarization free energy of solvation -59.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds