Wall clock time and date at job start Mon Mar 30 2020 01:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48497 * 109.47017 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47317 * 119.99809 * 3 2 1 6 6 H 1.48505 * 109.46985 * 239.99830 * 3 2 1 7 7 C 1.38812 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00125 * 208.44848 * 7 2 1 9 9 N 1.36932 * 119.99864 * 28.45918 * 7 2 1 10 10 C 1.47023 * 125.64676 * 199.71776 * 9 7 2 11 11 C 1.54327 * 107.27047 * 181.01539 * 10 9 7 12 12 C 1.55155 * 102.93944 * 22.19395 * 11 10 9 13 13 H 1.08995 * 111.00634 * 82.57427 * 12 11 10 14 14 F 1.39903 * 111.00120 * 206.38440 * 12 11 10 15 15 C 1.47424 * 125.65125 * 19.39910 * 9 7 2 16 16 H 0.96999 * 119.99939 * 185.65640 * 1 2 3 17 17 H 1.08998 * 109.87770 * 300.43121 * 10 9 7 18 18 H 1.08996 * 109.88326 * 61.44422 * 10 9 7 19 19 H 1.09003 * 110.71956 * 140.55244 * 11 10 9 20 20 H 1.09001 * 110.72236 * 263.65148 * 11 10 9 21 21 H 1.09001 * 110.36928 * 274.75730 * 15 9 7 22 22 H 1.09010 * 110.36519 * 37.07542 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7464 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.9924 -1.2584 0.4461 9 7 1.4497 -2.3166 -0.5641 10 6 1.8477 -3.7060 -0.2947 11 6 0.9607 -4.6149 -1.1715 12 6 0.4996 -3.6612 -2.3052 13 1 1.2591 -3.5830 -3.0830 14 9 -0.7238 -4.0758 -2.8425 15 6 0.3427 -2.3223 -1.5377 16 1 -0.4850 -0.8360 0.0828 17 1 2.8964 -3.8483 -0.5556 18 1 1.6931 -3.9383 0.7589 19 1 1.5404 -5.4442 -1.5772 20 1 0.1069 -4.9845 -0.6036 21 1 -0.6167 -2.2883 -1.0215 22 1 0.4358 -1.4796 -2.2229 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261330015.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:19 Heat of formation + Delta-G solvation = -56.325174 kcal Electronic energy + Delta-G solvation = -8967.935675 eV Core-core repulsion = 7050.840337 eV Total energy + Delta-G solvation = -1917.095338 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 159.075 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -48.65059 -38.96813 -34.66843 -30.88507 -29.56872 -26.26000 -22.32922 -22.10547 -19.66020 -17.84349 -16.88776 -15.99635 -15.63923 -15.55503 -14.93617 -14.50288 -14.06522 -13.23425 -12.83189 -12.52357 -12.44167 -11.90727 -11.81282 -11.61281 -11.47316 -10.56719 -9.11870 -8.41188 -5.45687 1.57192 1.65500 1.84862 2.59849 3.06786 3.26658 3.46069 3.67580 3.86185 3.90855 4.33174 4.58188 4.73832 4.81390 4.89522 5.11706 5.22091 5.62412 6.22042 6.79144 7.60372 8.17864 8.90078 Molecular weight = 159.08amu Principal moments of inertia in cm(-1) A = 0.088808 B = 0.017133 C = 0.015503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.210711 B = 1633.923480 C = 1805.653724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.079 4.079 3 Si 1.121 2.879 4 H -0.292 1.292 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.355 4.355 8 H 0.067 0.933 9 N -0.625 5.625 10 C 0.125 3.875 11 C -0.137 4.137 12 C 0.079 3.921 13 H 0.116 0.884 14 F -0.215 7.215 15 C 0.124 3.876 16 H 0.253 0.747 17 H 0.047 0.953 18 H 0.024 0.976 19 H 0.118 0.882 20 H 0.078 0.922 21 H 0.010 0.990 22 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.504 -6.566 -3.564 8.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.275 4.275 3 Si 0.944 3.056 4 H -0.218 1.218 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.483 4.483 8 H 0.085 0.915 9 N -0.352 5.352 10 C 0.000 4.000 11 C -0.175 4.175 12 C 0.042 3.958 13 H 0.134 0.866 14 F -0.196 7.196 15 C -0.003 4.003 16 H 0.063 0.937 17 H 0.065 0.935 18 H 0.042 0.958 19 H 0.136 0.864 20 H 0.097 0.903 21 H 0.028 0.972 22 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.373 -4.884 -3.585 6.934 hybrid contribution -0.264 -1.577 0.324 1.632 sum 3.109 -6.461 -3.260 7.876 Atomic orbital electron populations 1.70918 1.07843 1.29312 1.50223 1.27397 0.96441 1.05055 0.98608 0.82798 0.73811 0.71387 0.77609 1.21775 1.19617 1.20298 1.20043 0.99942 0.89373 1.38947 0.91550 1.44713 1.40598 1.02345 1.47582 1.21564 0.97678 0.83595 0.97125 1.23101 1.00779 0.97862 0.95731 1.22844 0.82193 0.94598 0.96205 0.86648 1.92744 1.47678 1.91332 1.87873 1.21951 0.91459 0.95627 0.91227 0.93708 0.93531 0.95824 0.86367 0.90337 0.97186 0.95051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.35 13.01 21.65 0.28 -59.07 14 2 C -0.08 -4.61 5.10 84.86 0.43 -4.18 14 3 Si 1.12 51.24 30.00 68.60 2.06 53.30 14 4 H -0.29 -13.58 7.11 99.48 0.71 -12.87 14 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 14 6 H -0.28 -11.85 7.11 99.48 0.71 -11.15 14 7 C -0.35 -20.46 10.00 84.03 0.84 -19.62 14 8 H 0.07 3.74 7.97 -2.91 -0.02 3.72 14 9 N -0.62 -32.59 3.26 -691.55 -2.26 -34.84 14 10 C 0.12 5.08 7.24 86.73 0.63 5.71 14 11 C -0.14 -4.41 6.76 31.78 0.21 -4.20 14 12 C 0.08 2.89 4.87 32.06 0.16 3.05 14 13 H 0.12 3.72 8.14 -2.39 -0.02 3.70 14 14 F -0.22 -8.00 17.24 44.97 0.78 -7.23 14 15 C 0.12 6.09 5.20 86.93 0.45 6.54 14 16 H 0.25 16.32 6.19 -92.71 -0.57 15.75 14 17 H 0.05 1.76 8.14 -2.39 -0.02 1.74 14 18 H 0.02 0.99 8.14 -2.39 -0.02 0.97 14 19 H 0.12 2.82 8.14 -2.39 -0.02 2.80 14 20 H 0.08 2.50 8.14 -2.39 -0.02 2.48 14 21 H 0.01 0.56 6.80 -2.39 -0.02 0.54 14 22 H 0.03 1.67 8.08 -2.38 -0.02 1.65 14 Total: -1.00 -66.83 193.74 4.97 -61.86 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: 1.39 Total: -1.32 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 2.72 Total: -12.70 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -1.97 Total: -93.92 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.78 Total: -7.23 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.06 Total: 53.30 kcal Total: -66.83 4.97 -61.86 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330015.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.534 kcal (2) G-P(sol) polarization free energy of solvation -66.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds