Wall clock time and date at job start Mon Mar 30 2020 01:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00056 * 2 1 4 4 H 1.48503 * 109.47309 * 239.99838 * 3 2 1 5 5 H 1.48503 * 109.47176 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47289 * 120.00000 * 3 2 1 7 7 C 1.37871 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99895 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.48080 * 110.99635 * 184.99775 * 10 9 7 12 12 C 1.54226 * 105.75047 * 145.34112 * 11 10 9 13 13 C 1.54558 * 104.50012 * 359.00165 * 12 11 10 14 14 N 1.46882 * 111.00086 * 302.24993 * 10 9 7 15 15 H 0.97009 * 120.00014 * 0.02562 * 1 2 3 16 16 H 1.09006 * 109.47057 * 59.99790 * 9 7 2 17 17 H 1.08996 * 109.47244 * 299.99782 * 9 7 2 18 18 H 1.09000 * 110.19478 * 26.27179 * 11 10 9 19 19 H 1.08994 * 110.26235 * 264.44586 * 11 10 9 20 20 H 1.09004 * 110.42528 * 117.75788 * 12 11 10 21 21 H 1.09004 * 110.42732 * 240.24096 * 12 11 10 22 22 H 1.08997 * 110.62580 * 95.81830 * 13 12 11 23 23 H 1.09004 * 110.62008 * 218.81760 * 13 12 11 24 24 H 1.00907 * 110.99558 * 79.88223 * 14 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5036 -4.9140 -0.1199 12 6 2.4330 -5.8164 -0.9568 13 6 3.6458 -4.9186 -1.2911 14 7 3.1038 -3.5403 -1.1592 15 1 -0.4850 0.8401 -0.0004 16 1 0.6246 -2.5570 -0.8897 17 1 0.6240 -2.5567 0.8903 18 1 0.5498 -4.7800 -0.6302 19 1 1.3441 -5.3498 0.8663 20 1 2.7491 -6.6815 -0.3738 21 1 1.9318 -6.1350 -1.8709 22 1 4.4536 -5.0833 -0.5781 23 1 3.9887 -5.1003 -2.3097 24 1 3.8447 -2.8741 -0.9999 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306657529.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:08 Heat of formation + Delta-G solvation = 31.211069 kcal Electronic energy + Delta-G solvation = -8560.319847 eV Core-core repulsion = 6895.510810 eV Total energy + Delta-G solvation = -1664.809036 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 156.096 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -37.65085 -33.06971 -30.82688 -29.62046 -26.40880 -22.97842 -20.74549 -20.31316 -16.30846 -15.85061 -15.09272 -14.21251 -13.74834 -12.54700 -12.19090 -12.09933 -11.55293 -11.33291 -11.15802 -10.86458 -10.64846 -10.40827 -9.86573 -9.29158 -9.03416 -8.36474 -6.83448 -5.98588 -3.99095 3.36808 3.40126 3.43055 4.43710 4.53248 5.21536 5.36885 5.41261 5.44063 5.84410 5.96242 6.16289 6.31611 6.38052 6.55386 7.27329 7.42648 7.69004 7.79384 8.04435 8.32569 8.52678 9.05787 9.63500 11.13078 Molecular weight = 156.10amu Principal moments of inertia in cm(-1) A = 0.101950 B = 0.014935 C = 0.013466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 274.577491 B = 1874.316500 C = 2078.832135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.503 4.503 8 H 0.058 0.942 9 C 0.186 3.814 10 N -0.375 5.375 11 C 0.028 3.972 12 C -0.126 4.126 13 C 0.030 3.970 14 N -0.517 5.517 15 H 0.261 0.739 16 H 0.001 0.999 17 H 0.036 0.964 18 H 0.044 0.956 19 H 0.072 0.928 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.038 0.962 23 H 0.076 0.924 24 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 -7.306 -1.301 8.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.060 3.940 10 N -0.191 5.191 11 C -0.102 4.102 12 C -0.165 4.165 13 C -0.101 4.101 14 N -0.238 5.238 15 H 0.071 0.929 16 H 0.019 0.981 17 H 0.054 0.946 18 H 0.062 0.938 19 H 0.091 0.909 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.056 0.944 23 H 0.094 0.906 24 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.216 -7.143 -1.345 8.403 hybrid contribution 0.498 0.837 0.006 0.974 sum 4.714 -6.306 -1.339 7.986 Atomic orbital electron populations 1.69948 1.06055 1.26827 1.51096 1.24960 0.94878 0.99272 0.95475 0.86537 0.79406 0.82743 0.78548 1.20242 1.21383 1.20295 1.20975 0.93110 0.90055 1.50018 0.92373 1.19911 0.90236 0.87500 0.96344 1.68107 1.18552 1.02893 1.29515 1.22970 0.96415 0.91791 0.98992 1.22469 0.96422 0.97867 0.99698 1.22968 0.95826 0.91262 1.00059 1.66667 1.19026 1.04363 1.33709 0.92893 0.98084 0.94602 0.93789 0.90938 0.91698 0.91649 0.94369 0.90580 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.66 14 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 14 3 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 14 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 14 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 14 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 14 7 C -0.50 -14.56 8.80 -34.44 -0.30 -14.86 14 8 H 0.06 1.64 6.90 -52.49 -0.36 1.27 14 9 C 0.19 5.12 4.93 -4.97 -0.02 5.09 14 10 N -0.37 -8.71 5.73 -113.45 -0.65 -9.36 14 11 C 0.03 0.54 6.92 -2.53 -0.02 0.52 14 12 C -0.13 -1.97 7.04 -25.27 -0.18 -2.15 14 13 C 0.03 0.49 7.74 -2.01 -0.02 0.48 14 14 N -0.52 -10.99 7.18 -8.53 -0.06 -11.06 14 15 H 0.26 7.52 8.31 -40.82 -0.34 7.18 14 16 H 0.00 0.04 7.97 -51.93 -0.41 -0.38 14 17 H 0.04 1.04 8.14 -51.93 -0.42 0.62 14 18 H 0.04 0.88 7.67 -51.93 -0.40 0.48 14 19 H 0.07 1.27 8.14 -51.93 -0.42 0.85 14 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 14 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 14 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 14 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 14 24 H 0.35 7.31 8.01 -173.38 -1.39 5.92 14 LS Contribution 205.65 15.07 3.10 3.10 Total: -1.00 -30.94 205.65 -6.77 -37.70 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.23 Total: -1.35 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.64 Total: -9.41 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.03 Total: -47.07 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -30.94 -6.77 -37.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306657529.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.914 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds