Wall clock time and date at job start Mon Mar 30 2020 01:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00056 * 2 1 4 4 H 1.48503 * 109.47309 * 239.99838 * 3 2 1 5 5 H 1.48503 * 109.47176 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47289 * 120.00000 * 3 2 1 7 7 C 1.37871 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99895 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.48080 * 110.99635 * 184.99775 * 10 9 7 12 12 C 1.54226 * 105.75047 * 145.34112 * 11 10 9 13 13 C 1.54558 * 104.50012 * 359.00165 * 12 11 10 14 14 N 1.46882 * 111.00086 * 302.24993 * 10 9 7 15 15 H 0.97009 * 120.00014 * 0.02562 * 1 2 3 16 16 H 1.09006 * 109.47057 * 59.99790 * 9 7 2 17 17 H 1.08996 * 109.47244 * 299.99782 * 9 7 2 18 18 H 1.09000 * 110.19478 * 26.27179 * 11 10 9 19 19 H 1.08994 * 110.26235 * 264.44586 * 11 10 9 20 20 H 1.09004 * 110.42528 * 117.75788 * 12 11 10 21 21 H 1.09004 * 110.42732 * 240.24096 * 12 11 10 22 22 H 1.08997 * 110.62580 * 95.81830 * 13 12 11 23 23 H 1.09004 * 110.62008 * 218.81760 * 13 12 11 24 24 H 1.00907 * 110.99558 * 79.88223 * 14 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5036 -4.9140 -0.1199 12 6 2.4330 -5.8164 -0.9568 13 6 3.6458 -4.9186 -1.2911 14 7 3.1038 -3.5403 -1.1592 15 1 -0.4850 0.8401 -0.0004 16 1 0.6246 -2.5570 -0.8897 17 1 0.6240 -2.5567 0.8903 18 1 0.5498 -4.7800 -0.6302 19 1 1.3441 -5.3498 0.8663 20 1 2.7491 -6.6815 -0.3738 21 1 1.9318 -6.1350 -1.8709 22 1 4.4536 -5.0833 -0.5781 23 1 3.9887 -5.1003 -2.3097 24 1 3.8447 -2.8741 -0.9999 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306657529.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:08 Heat of formation + Delta-G solvation = 8.253223 kcal Electronic energy + Delta-G solvation = -8561.315373 eV Core-core repulsion = 6895.510810 eV Total energy + Delta-G solvation = -1665.804563 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 156.096 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.26273 -35.18418 -32.67044 -31.15979 -28.42408 -24.88441 -22.38443 -21.91614 -18.44555 -17.55446 -16.75957 -16.06309 -15.47644 -14.49953 -13.96955 -13.72362 -13.24322 -13.00808 -12.87030 -12.58108 -12.41643 -12.06706 -11.88500 -11.24913 -10.80366 -10.55008 -8.59354 -8.20728 -6.30471 1.41585 1.45852 1.53368 2.41206 2.83603 3.14957 3.82945 4.00909 4.14547 4.39494 4.62120 4.81019 4.90592 5.02137 5.14346 5.24484 5.26370 5.60674 5.93504 6.03524 6.43256 6.55728 6.85751 7.37999 8.91655 Molecular weight = 156.10amu Principal moments of inertia in cm(-1) A = 0.101950 B = 0.014935 C = 0.013466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 274.577491 B = 1874.316500 C = 2078.832135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.202 3.798 10 N -0.385 5.385 11 C 0.019 3.981 12 C -0.117 4.117 13 C 0.029 3.971 14 N -0.537 5.537 15 H 0.265 0.735 16 H -0.036 1.036 17 H 0.010 0.990 18 H 0.027 0.973 19 H 0.088 0.912 20 H 0.098 0.902 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.101 0.899 24 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.188 -7.706 -1.533 10.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.559 4.559 8 H 0.082 0.918 9 C 0.075 3.925 10 N -0.200 5.200 11 C -0.111 4.111 12 C -0.155 4.155 13 C -0.101 4.101 14 N -0.258 5.258 15 H 0.073 0.927 16 H -0.018 1.018 17 H 0.027 0.973 18 H 0.045 0.955 19 H 0.106 0.894 20 H 0.116 0.884 21 H 0.096 0.904 22 H 0.071 0.929 23 H 0.119 0.881 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.806 -7.576 -1.577 9.674 hybrid contribution 0.006 0.865 0.065 0.867 sum 5.812 -6.711 -1.512 9.006 Atomic orbital electron populations 1.70091 1.07879 1.28008 1.51800 1.25959 0.95798 1.03414 0.94698 0.85341 0.78042 0.77503 0.79112 1.19193 1.20897 1.19170 1.21318 0.93511 0.90970 1.50134 0.91842 1.19527 0.90281 0.89365 0.93313 1.67966 1.18051 1.03000 1.31019 1.23137 0.96375 0.90913 1.00649 1.22501 0.95067 0.97895 1.00043 1.23163 0.96396 0.88475 1.02043 1.66622 1.19340 1.07226 1.32656 0.92668 1.01829 0.97252 0.95463 0.89363 0.88350 0.90437 0.92903 0.88050 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.13 13.29 21.44 0.28 -57.84 14 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 14 3 Si 0.98 45.13 29.54 68.60 2.03 47.16 14 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 14 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 14 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 14 7 C -0.52 -30.54 8.80 25.60 0.23 -30.32 14 8 H 0.06 3.56 6.90 -2.91 -0.02 3.54 14 9 C 0.20 11.49 4.93 85.56 0.42 11.91 14 10 N -0.39 -17.90 5.73 -512.84 -2.94 -20.84 14 11 C 0.02 0.70 6.92 86.49 0.60 1.30 14 12 C -0.12 -3.30 7.04 31.54 0.22 -3.08 14 13 C 0.03 0.88 7.74 86.49 0.67 1.55 14 14 N -0.54 -22.35 7.18 -180.90 -1.30 -23.64 14 15 H 0.26 15.39 8.31 -92.70 -0.77 14.62 14 16 H -0.04 -2.26 7.97 -2.38 -0.02 -2.28 14 17 H 0.01 0.58 8.14 -2.39 -0.02 0.56 14 18 H 0.03 1.10 7.67 -2.39 -0.02 1.08 14 19 H 0.09 3.00 8.14 -2.39 -0.02 2.98 14 20 H 0.10 2.16 8.14 -2.39 -0.02 2.14 14 21 H 0.08 2.02 8.14 -2.38 -0.02 2.00 14 22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 14 23 H 0.10 2.57 8.14 -2.38 -0.02 2.55 14 24 H 0.34 14.24 8.01 -203.76 -1.63 12.61 14 Total: -1.00 -66.74 205.65 0.22 -66.53 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -0.46 Total: 6.87 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 2.60 Total: -18.22 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -3.95 Total: -102.33 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -66.74 0.22 -66.53 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306657529.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.779 kcal (2) G-P(sol) polarization free energy of solvation -66.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds