Wall clock time and date at job start Mon Mar 30 2020 02:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30593 * 1 3 3 Si 1.86800 * 119.99985 * 2 1 4 4 H 1.48509 * 109.46960 * 240.00017 * 3 2 1 5 5 H 1.48501 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47493 * 119.99902 * 3 2 1 7 7 C 1.40227 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00128 * 196.28583 * 7 2 1 9 9 C 1.41672 * 119.99706 * 16.29408 * 7 2 1 10 10 N 1.31645 * 120.00204 * 24.36486 * 9 7 2 11 11 C 1.47552 * 119.99498 * 204.36922 * 9 7 2 12 12 C 1.36542 * 126.08739 * 179.69218 * 11 9 7 13 13 C 1.40129 * 107.29933 * 179.84740 * 12 11 9 14 14 C 1.35319 * 107.72440 * 0.41220 * 13 12 11 15 15 N 1.35977 * 108.55301 * 359.74801 * 14 13 12 16 16 H 0.97001 * 125.69758 * 180.02562 * 15 14 13 17 17 H 0.97004 * 119.99852 * 0.02562 * 1 2 3 18 18 H 0.97000 * 120.00049 * 5.90855 * 10 9 7 19 19 H 1.07998 * 126.35444 * 359.97438 * 12 11 9 20 20 H 1.07991 * 126.14046 * 180.12249 * 13 12 11 21 21 H 1.08001 * 125.72588 * 179.72253 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0937 1.6964 -1.2126 5 1 1.2749 2.7465 -0.0006 6 1 3.0937 1.6965 1.2124 7 6 2.0071 -1.2144 0.0005 8 1 3.0545 -1.2331 0.2628 9 6 1.3413 -2.4168 -0.3432 10 7 0.2650 -2.3800 -1.1002 11 6 1.8544 -3.7103 0.1476 12 6 1.3105 -4.9378 -0.1010 13 6 2.1107 -5.8873 0.5483 14 6 3.1077 -5.2241 1.1787 15 7 2.9604 -3.8935 0.9403 16 1 3.5402 -3.1911 1.2742 17 1 -0.4850 0.8401 -0.0004 18 1 -0.0232 -1.5413 -1.4931 19 1 0.4285 -5.1397 -0.6907 20 1 1.9565 -6.9562 0.5498 21 1 3.8890 -5.6758 1.7719 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306916277.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:54 Heat of formation + Delta-G solvation = 28.863830 kcal Electronic energy + Delta-G solvation = -8609.710966 eV Core-core repulsion = 6871.196963 eV Total energy + Delta-G solvation = -1738.514004 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 164.064 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.59286 -36.85448 -33.51909 -31.71197 -29.16985 -27.99243 -23.32718 -21.35948 -20.51420 -19.17674 -17.54578 -16.83162 -15.37946 -14.90274 -14.41323 -14.19013 -13.70970 -13.36926 -12.93392 -12.78295 -12.63868 -12.13813 -11.53570 -10.66795 -9.61871 -9.54582 -8.55696 -8.49192 -6.73986 1.05621 1.35108 1.42703 1.49035 2.12047 2.18629 2.51155 2.67336 3.51763 4.42192 4.53302 4.75908 4.89133 5.18126 5.40511 5.58291 5.89210 5.93275 6.33966 6.45250 6.72429 6.90574 7.07024 8.33196 8.35825 Molecular weight = 164.06amu Principal moments of inertia in cm(-1) A = 0.085478 B = 0.015014 C = 0.013152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.489586 B = 1864.474876 C = 2128.504918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.992 3.008 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.305 3.695 10 N -0.816 5.816 11 C 0.037 3.963 12 C -0.191 4.191 13 C -0.227 4.227 14 C -0.001 4.001 15 N -0.540 5.540 16 H 0.422 0.578 17 H 0.287 0.713 18 H 0.318 0.682 19 H 0.114 0.886 20 H 0.157 0.843 21 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.930 -2.575 3.662 9.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.184 4.184 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.587 4.587 8 H 0.099 0.901 9 C 0.130 3.870 10 N -0.443 5.443 11 C -0.077 4.077 12 C -0.218 4.218 13 C -0.252 4.252 14 C -0.134 4.134 15 N -0.135 5.135 16 H 0.260 0.740 17 H 0.097 0.903 18 H 0.132 0.868 19 H 0.132 0.868 20 H 0.175 0.825 21 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.149 -3.121 3.414 8.515 hybrid contribution 0.387 2.079 0.046 2.115 sum 7.537 -1.042 3.460 8.358 Atomic orbital electron populations 1.69745 1.09302 1.30700 1.37505 1.26837 0.95479 1.04874 0.91169 0.85120 0.78464 0.75122 0.80099 1.18718 1.19786 1.17640 1.20498 0.98526 0.92837 1.46881 0.90063 1.18872 0.90072 0.88677 0.89348 1.69678 1.19179 1.34707 1.20725 1.19316 0.92441 0.94442 1.01512 1.21032 1.02236 0.92219 1.06323 1.21096 0.98621 0.99694 1.05757 1.22529 1.03376 0.81775 1.05744 1.42005 1.22891 1.08764 1.39861 0.74037 0.90268 0.86803 0.86790 0.82529 0.77313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.08 11.36 21.87 0.25 -46.83 14 2 C 0.03 1.64 5.15 85.36 0.44 2.08 14 3 Si 0.99 38.98 29.59 68.60 2.03 41.01 14 4 H -0.26 -10.12 7.11 99.48 0.71 -9.42 14 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 14 6 H -0.25 -9.26 7.11 99.48 0.71 -8.55 14 7 C -0.55 -29.73 8.95 23.60 0.21 -29.52 14 8 H 0.08 3.98 7.42 -2.91 -0.02 3.96 14 9 C 0.30 17.46 6.66 42.48 0.28 17.74 14 10 N -0.82 -49.82 13.29 -48.26 -0.64 -50.46 14 11 C 0.04 1.80 6.94 40.35 0.28 2.08 14 12 C -0.19 -8.81 10.56 22.33 0.24 -8.58 14 13 C -0.23 -8.05 10.83 22.05 0.24 -7.81 14 14 C 0.00 -0.03 11.92 83.38 0.99 0.97 14 15 N -0.54 -20.51 5.98 -183.81 -1.10 -21.61 14 16 H 0.42 14.02 8.35 -92.71 -0.77 13.25 14 17 H 0.29 14.59 8.29 -92.71 -0.77 13.82 14 18 H 0.32 19.79 6.72 -92.71 -0.62 19.17 14 19 H 0.11 5.52 8.06 -2.91 -0.02 5.50 14 20 H 0.16 4.43 8.06 -2.91 -0.02 4.41 14 21 H 0.21 4.07 8.06 -2.91 -0.02 4.05 14 Total: -1.00 -67.48 197.52 3.08 -64.40 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.14 Total: 36.53 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 2.68 Total: -23.04 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -1.49 Total: -118.90 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -67.48 3.08 -64.40 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306916277.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.265 kcal (2) G-P(sol) polarization free energy of solvation -67.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds