Wall clock time and date at job start Mon Mar 30 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09001 * 109.40894 * 130.25779 * 3 2 1 5 5 C 1.52957 * 109.41453 * 250.12062 * 3 2 1 6 6 C 1.53235 * 109.39888 * 183.77648 * 5 3 2 7 7 C 1.51263 * 108.48329 * 305.26190 * 6 5 3 8 8 C 1.37878 * 120.85169 * 231.36581 * 7 6 5 9 9 N 1.31516 * 119.99801 * 180.02562 * 8 7 6 10 10 Si 1.86799 * 119.99714 * 0.02562 * 8 7 6 11 11 H 1.48502 * 109.46820 * 90.00302 * 10 8 7 12 12 H 1.48501 * 109.46978 * 209.99566 * 10 8 7 13 13 H 1.48497 * 109.47259 * 329.99692 * 10 8 7 14 14 C 1.51273 * 118.30216 * 51.39347 * 7 6 5 15 15 C 1.52962 * 109.41158 * 10.40234 * 3 2 1 16 16 H 4.18644 * 15.05231 * 0.02562 * 4 2 1 17 17 H 1.09003 * 109.47906 * 303.68414 * 5 3 2 18 18 H 1.08994 * 109.48514 * 63.72045 * 5 3 2 19 19 H 1.09004 * 109.61809 * 185.58215 * 6 5 3 20 20 H 1.09006 * 109.68712 * 64.98584 * 6 5 3 21 21 H 0.97003 * 119.99507 * 180.02562 * 9 8 7 22 22 H 1.08994 * 109.62790 * 188.93669 * 14 7 6 23 23 H 1.09000 * 109.62672 * 68.36334 * 14 7 6 24 24 H 1.08995 * 109.48152 * 296.27082 * 15 3 2 25 25 H 1.08997 * 109.47878 * 56.31888 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0079 0.6652 -0.7846 5 6 3.1542 0.4914 1.3566 6 6 4.6835 0.5818 1.3248 7 6 5.2347 -0.7623 0.9034 8 6 6.2141 -1.3888 1.6446 9 7 6.6817 -2.5571 1.2624 10 14 6.8766 -0.5781 3.1916 11 1 6.0666 -1.0061 4.3604 12 1 8.2911 -0.9820 3.3952 13 1 6.7989 0.8979 3.0492 14 6 4.6845 -1.4013 -0.3525 15 6 3.1550 -1.4181 -0.2605 16 1 -1.0500 -0.0001 0.0009 17 1 2.7370 1.4764 1.5664 18 1 2.8463 -0.2071 2.1346 19 1 5.0559 0.8354 2.3175 20 1 4.9915 1.3446 0.6096 21 1 7.3704 -2.9980 1.7842 22 1 5.0574 -2.4219 -0.4376 23 1 4.9926 -0.8222 -1.2231 24 1 2.8471 -2.0705 0.5566 25 1 2.7385 -1.7873 -1.1976 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306918937.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:12 Heat of formation + Delta-G solvation = 10.447903 kcal Electronic energy + Delta-G solvation = -9016.838415 eV Core-core repulsion = 7381.066181 eV Total energy + Delta-G solvation = -1635.772235 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 164.090 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.92373 -34.97220 -33.02965 -31.46950 -29.58446 -24.54104 -23.28880 -21.37722 -18.85312 -18.02923 -16.39048 -15.71901 -15.11567 -14.72619 -14.23870 -14.05336 -13.37174 -12.86556 -12.75645 -12.70828 -11.98784 -11.85046 -11.54607 -11.16798 -11.07139 -10.65501 -10.53599 -10.37315 -8.16139 -6.10320 1.39768 1.42100 1.51473 2.00421 2.01633 2.42054 3.10585 3.61796 4.17018 4.31500 4.53657 4.73853 4.95265 5.00826 5.07729 5.17317 5.24257 5.26836 5.46082 5.58767 5.65757 5.77026 5.86425 6.36598 6.80744 6.96201 7.47475 8.95209 Molecular weight = 164.09amu Principal moments of inertia in cm(-1) A = 0.072764 B = 0.016498 C = 0.014411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.713144 B = 1696.811455 C = 1942.546578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.208 4.208 3 C 0.028 3.972 4 H 0.084 0.916 5 C -0.092 4.092 6 C -0.019 4.019 7 C -0.502 4.502 8 C 0.017 3.983 9 N -0.934 5.934 10 Si 0.943 3.057 11 H -0.275 1.275 12 H -0.292 1.292 13 H -0.250 1.250 14 C 0.004 3.996 15 C -0.089 4.089 16 H 0.253 0.747 17 H 0.061 0.939 18 H 0.044 0.956 19 H 0.035 0.965 20 H 0.027 0.973 21 H 0.263 0.737 22 H 0.026 0.974 23 H 0.005 0.995 24 H 0.036 0.964 25 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 5.501 0.237 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.208 4.208 3 C 0.010 3.990 4 H 0.102 0.898 5 C -0.130 4.130 6 C -0.057 4.057 7 C -0.521 4.521 8 C -0.180 4.180 9 N -0.574 5.574 10 Si 0.769 3.231 11 H -0.200 1.200 12 H -0.218 1.218 13 H -0.174 1.174 14 C -0.033 4.033 15 C -0.127 4.127 16 H 0.269 0.731 17 H 0.080 0.920 18 H 0.062 0.938 19 H 0.053 0.947 20 H 0.045 0.955 21 H 0.072 0.928 22 H 0.045 0.955 23 H 0.024 0.976 24 H 0.055 0.945 25 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.411 5.366 0.281 9.154 hybrid contribution 0.545 -0.172 0.663 0.875 sum -6.866 5.194 0.944 8.661 Atomic orbital electron populations 1.25632 0.96485 1.00352 1.00406 1.23759 0.95119 1.00971 1.00971 1.18158 0.83908 0.97948 0.99006 0.89807 1.21493 0.97100 0.99327 0.95107 1.19810 0.93020 0.95600 0.97233 1.20698 1.19057 1.03406 1.08916 1.25676 0.96533 0.95221 1.00607 1.69985 1.29802 1.16704 1.40937 0.85761 0.77166 0.80050 0.80086 1.20030 1.21845 1.17427 1.19383 0.91615 0.97267 0.95033 1.21472 0.97592 0.94663 0.98971 0.73093 0.92031 0.93757 0.94682 0.95473 0.92834 0.95510 0.97631 0.94483 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.02 19.25 74.32 1.43 -4.58 15 2 C -0.21 -7.32 12.55 31.13 0.39 -6.93 15 3 C 0.03 1.09 2.46 -12.62 -0.03 1.06 15 4 H 0.08 3.20 8.14 -2.39 -0.02 3.18 15 5 C -0.09 -3.72 5.17 30.66 0.16 -3.57 15 6 C -0.02 -0.87 5.59 30.11 0.17 -0.70 15 7 C -0.50 -26.81 5.51 -16.17 -0.09 -26.90 15 8 C 0.02 0.97 5.46 84.65 0.46 1.43 15 9 N -0.93 -55.82 12.73 21.45 0.27 -55.54 15 10 Si 0.94 43.51 27.27 68.60 1.87 45.38 15 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 12 H -0.29 -13.43 7.11 99.48 0.71 -12.73 15 13 H -0.25 -10.76 6.46 99.48 0.64 -10.11 15 14 C 0.00 0.23 5.97 30.11 0.18 0.41 15 15 C -0.09 -3.93 5.17 30.66 0.16 -3.77 15 16 H 0.25 4.50 7.80 -4.42 -0.03 4.46 15 17 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 18 H 0.04 1.85 8.14 -2.39 -0.02 1.83 15 19 H 0.03 1.55 4.78 -2.38 -0.01 1.54 15 20 H 0.03 1.18 8.14 -2.38 -0.02 1.16 15 21 H 0.26 14.89 8.31 -92.71 -0.77 14.12 15 22 H 0.03 1.52 7.07 -2.39 -0.02 1.50 15 23 H 0.01 0.27 8.14 -2.39 -0.02 0.25 15 24 H 0.04 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.05 1.92 8.14 -2.39 -0.02 1.91 15 Total: -1.00 -60.53 212.77 6.06 -54.47 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: 1.09 Total: -0.75 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 2.83 Total: -43.55 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.27 Total: -55.54 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.87 Total: 45.38 kcal Total: -60.53 6.06 -54.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306918937.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.916 kcal (2) G-P(sol) polarization free energy of solvation -60.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds