Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99770 * 2 1 4 4 H 1.48498 * 109.47324 * 240.00073 * 3 2 1 5 5 H 1.48507 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46884 * 120.00160 * 3 2 1 7 7 C 1.37875 * 120.00554 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00506 * 175.13541 * 7 2 1 9 9 C 1.50704 * 119.99656 * 355.40781 * 7 2 1 10 10 C 1.52997 * 115.54832 * 274.93276 * 9 7 2 11 11 Cl 1.80298 * 109.47080 * 294.82127 * 10 9 7 12 12 C 1.52994 * 117.49898 * 129.25907 * 9 7 2 13 13 C 1.52999 * 117.49789 * 60.59977 * 9 7 2 14 14 H 0.96992 * 120.00161 * 4.99447 * 1 2 3 15 15 H 1.08992 * 109.47387 * 54.82519 * 10 9 7 16 16 H 1.09004 * 109.47083 * 174.82731 * 10 9 7 17 17 H 1.09008 * 117.49683 * 0.02562 * 12 9 7 18 18 H 1.09001 * 117.50224 * 145.01789 * 12 9 7 19 19 H 1.08998 * 117.49928 * 214.97723 * 13 9 7 20 20 H 1.09002 * 117.50027 * 359.97438 * 13 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7466 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0817 -1.1956 -0.0798 9 6 1.2548 -2.4971 0.1034 10 6 0.9192 -2.9537 1.5245 11 17 2.4444 -3.3155 2.4154 12 6 1.5730 -3.5796 -0.9299 13 6 0.2453 -2.8211 -0.9997 14 1 -0.4850 0.8368 -0.0731 15 1 0.3753 -2.1631 2.0413 16 1 0.3020 -3.8512 1.4816 17 1 2.3251 -3.3493 -1.6847 18 1 1.5430 -4.6172 -0.5974 19 1 -0.6577 -3.3600 -0.7130 20 1 0.1231 -2.0916 -1.8003 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307522282.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = 0.014647 kcal Electronic energy + Delta-G solvation = -7202.305292 eV Core-core repulsion = 5618.270745 eV Total energy + Delta-G solvation = -1584.034547 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 160.035 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -36.64369 -34.52961 -31.93304 -26.97417 -25.20943 -21.09766 -19.16672 -16.04958 -14.64879 -13.93966 -13.32709 -12.92793 -12.23493 -11.74028 -10.96555 -10.91233 -10.56535 -10.20814 -10.07454 -9.44941 -9.12239 -8.87576 -8.42821 -8.12169 -6.04098 -4.10864 3.32237 3.36406 3.40195 3.43619 4.41049 5.23265 5.38347 5.94315 6.16896 6.33102 6.49473 6.70672 6.79180 7.06248 7.33874 7.52294 7.88516 8.39829 8.91307 9.55278 11.03710 Molecular weight = 160.03amu Principal moments of inertia in cm(-1) A = 0.053765 B = 0.022707 C = 0.018546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.656718 B = 1232.782787 C = 1509.436247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.485 4.485 8 H 0.062 0.938 9 C 0.026 3.974 10 C 0.028 3.972 11 Cl -0.219 7.219 12 C -0.204 4.204 13 C -0.146 4.146 14 H 0.261 0.739 15 H 0.088 0.912 16 H 0.058 0.942 17 H 0.079 0.921 18 H 0.066 0.934 19 H 0.062 0.938 20 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.685 -3.447 1.061 3.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.523 4.523 8 H 0.080 0.920 9 C 0.026 3.974 10 C -0.034 4.034 11 Cl -0.193 7.193 12 C -0.242 4.242 13 C -0.184 4.184 14 H 0.071 0.929 15 H 0.107 0.893 16 H 0.077 0.923 17 H 0.097 0.903 18 H 0.084 0.916 19 H 0.081 0.919 20 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.625 -3.337 1.198 3.600 hybrid contribution 0.381 0.911 0.002 0.987 sum 1.006 -2.426 1.200 2.888 Atomic orbital electron populations 1.69970 1.05863 1.26918 1.49441 1.24991 0.94860 0.99009 0.94509 0.86657 0.79648 0.82924 0.78822 1.20259 1.21334 1.19999 1.20349 0.92869 0.88264 1.50799 0.92009 1.19007 0.99167 0.93919 0.85348 1.24043 0.83767 0.99929 0.95703 1.98624 1.45303 1.95878 1.79524 1.22995 1.00259 0.95565 1.05356 1.22554 0.90783 1.01491 1.03570 0.92927 0.89305 0.92310 0.90251 0.91585 0.91950 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.64 12.65 55.43 0.70 -23.94 14 2 C 0.07 1.88 5.43 -17.82 -0.10 1.78 14 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 14 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 14 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 14 7 C -0.49 -13.16 8.58 -34.44 -0.30 -13.45 14 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 14 9 C 0.03 0.64 1.50 -155.66 -0.23 0.41 14 10 C 0.03 0.63 6.50 37.16 0.24 0.87 14 11 Cl -0.22 -4.65 28.92 -51.86 -1.50 -6.15 14 12 C -0.20 -4.47 9.96 -26.70 -0.27 -4.73 14 13 C -0.15 -3.38 9.14 -26.70 -0.24 -3.62 14 14 H 0.26 6.99 8.32 -40.82 -0.34 6.65 14 15 H 0.09 2.09 8.14 -51.93 -0.42 1.67 14 16 H 0.06 1.16 8.09 -51.93 -0.42 0.74 14 17 H 0.08 1.73 8.14 -51.92 -0.42 1.31 14 18 H 0.07 1.31 8.14 -51.93 -0.42 0.88 14 19 H 0.06 1.33 8.14 -51.93 -0.42 0.91 14 20 H 0.09 2.18 8.14 -51.93 -0.42 1.76 14 LS Contribution 198.47 15.07 2.99 2.99 Total: -1.00 -27.28 198.47 -5.80 -33.09 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -2.08 Total: -3.41 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -0.89 Total: -18.75 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.70 Total: -23.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -4.65 SS G_CDS: -1.50 Total: -6.15 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -27.28 -5.80 -33.09 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307522282.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.100 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds