Wall clock time and date at job start Mon Mar 30 2020 01:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86802 * 119.99891 * 2 1 4 4 H 1.48495 * 109.47480 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46996 * 300.00243 * 3 2 1 6 6 H 1.48502 * 109.47211 * 59.99708 * 3 2 1 7 7 C 1.38636 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99851 * 179.97438 * 7 2 1 9 9 O 1.34921 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.42905 * 116.99780 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46728 * 179.97438 * 10 9 7 12 12 N 1.46901 * 115.55181 * 34.33522 * 11 10 9 13 13 C 1.53006 * 117.49936 * 248.62030 * 11 10 9 14 14 C 1.53000 * 60.00083 * 252.51494 * 13 11 10 15 15 H 0.96994 * 120.00324 * 0.02562 * 1 2 3 16 16 H 1.09000 * 109.47187 * 300.00020 * 10 9 7 17 17 H 1.09001 * 109.46558 * 60.00067 * 10 9 7 18 18 H 1.00896 * 110.99913 * 325.57594 * 12 11 10 19 19 H 1.00895 * 111.00163 * 89.53318 * 12 11 10 20 20 H 1.08996 * 117.49984 * 0.02562 * 13 11 10 21 21 H 1.09004 * 117.49682 * 145.02599 * 13 11 10 22 22 H 1.08997 * 117.49978 * 252.51236 * 14 13 11 23 23 H 1.09001 * 117.49786 * 107.48741 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3465 0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0001 9 8 1.3345 -2.3691 0.0005 10 6 2.1128 -3.5675 0.0005 11 6 1.1808 -4.7809 0.0012 12 7 -0.0734 -4.6169 -0.7459 13 6 1.1433 -5.6422 1.2652 14 6 1.8268 -6.1679 0.0013 15 1 -0.4850 0.8400 -0.0004 16 1 2.7417 -3.5924 -0.8894 17 1 2.7416 -3.5923 0.8906 18 1 -0.4126 -3.6690 -0.6793 19 1 0.0410 -4.8932 -1.7095 20 1 1.7822 -5.3443 2.0964 21 1 0.1877 -6.0873 1.5427 22 1 1.3210 -6.9586 -0.5526 23 1 2.9158 -6.2158 0.0010 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575456409.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:28 Heat of formation + Delta-G solvation = -14.405818 kcal Electronic energy + Delta-G solvation = -8538.285224 eV Core-core repulsion = 6773.779429 eV Total energy + Delta-G solvation = -1764.505795 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -37.83723 -35.50889 -31.66575 -30.30570 -26.33863 -23.95087 -22.03029 -19.01173 -17.55080 -15.79631 -14.90037 -14.55762 -13.94629 -13.76974 -13.28824 -12.59223 -11.59960 -11.17566 -11.11395 -10.99727 -10.35886 -10.25025 -9.84767 -9.33633 -9.19107 -8.04847 -7.96379 -5.99084 -3.63175 3.28560 3.31834 3.36368 4.14639 4.33086 4.93408 5.10504 5.32262 5.43002 5.81721 5.94557 6.07835 6.31754 6.40391 6.49196 6.59911 6.62738 7.44186 7.84128 8.17439 8.40847 9.44368 10.11180 11.21815 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.112472 B = 0.013474 C = 0.012707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 248.890260 B = 2077.584133 C = 2202.898126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.024 3.976 3 Si 0.926 3.074 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.362 4.362 8 H 0.062 0.938 9 O -0.294 6.294 10 C 0.083 3.917 11 C 0.058 3.942 12 N -0.811 5.811 13 C -0.163 4.163 14 C -0.179 4.179 15 H 0.258 0.742 16 H 0.024 0.976 17 H 0.028 0.972 18 H 0.370 0.630 19 H 0.331 0.669 20 H 0.090 0.910 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 -6.798 -0.466 7.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.174 4.174 3 Si 0.753 3.247 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.441 4.441 8 H 0.080 0.920 9 O -0.209 6.209 10 C 0.003 3.997 11 C -0.036 4.036 12 N -0.343 5.343 13 C -0.201 4.201 14 C -0.217 4.217 15 H 0.068 0.932 16 H 0.042 0.958 17 H 0.046 0.954 18 H 0.187 0.813 19 H 0.143 0.857 20 H 0.108 0.892 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.881 -7.206 0.038 7.761 hybrid contribution 1.297 1.487 -0.553 2.049 sum 4.178 -5.719 -0.515 7.102 Atomic orbital electron populations 1.70017 1.05343 1.25920 1.51669 1.24953 0.95702 0.97712 0.99053 0.85879 0.78784 0.82245 0.77751 1.19973 1.20851 1.20817 1.20829 0.90221 0.82504 1.50583 0.91997 1.85482 1.31749 1.10296 1.93346 1.22089 0.92497 0.86979 0.98125 1.21262 0.92062 0.90280 0.99992 1.58653 1.26285 1.33363 1.15957 1.23109 1.01908 1.03544 0.91520 1.23079 0.99284 0.96635 1.02667 0.93182 0.95765 0.95361 0.81285 0.85694 0.89162 0.88664 0.88725 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.64 13.67 55.48 0.76 -26.89 14 2 C 0.02 0.72 5.49 -17.51 -0.10 0.62 14 3 Si 0.93 22.15 29.55 -169.99 -5.02 17.12 14 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 14 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 14 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 14 7 C -0.36 -10.74 9.89 30.88 0.31 -10.44 14 8 H 0.06 1.74 7.77 -52.49 -0.41 1.34 14 9 O -0.29 -8.41 8.50 -16.48 -0.14 -8.55 14 10 C 0.08 1.89 6.24 37.16 0.23 2.12 14 11 C 0.06 1.14 3.08 -131.60 -0.41 0.73 14 12 N -0.81 -16.02 9.75 0.75 0.01 -16.01 14 13 C -0.16 -2.78 10.10 -26.73 -0.27 -3.05 14 14 C -0.18 -2.76 10.18 -26.73 -0.27 -3.04 14 15 H 0.26 7.50 8.31 -40.82 -0.34 7.16 14 16 H 0.02 0.54 8.14 -51.93 -0.42 0.12 14 17 H 0.03 0.63 7.90 -51.93 -0.41 0.22 14 18 H 0.37 8.49 7.73 -39.29 -0.30 8.19 14 19 H 0.33 5.74 9.08 -39.29 -0.36 5.38 14 20 H 0.09 1.47 8.05 -51.93 -0.42 1.06 14 21 H 0.09 1.58 8.14 -51.93 -0.42 1.15 14 22 H 0.09 1.33 8.14 -51.93 -0.42 0.91 14 23 H 0.09 1.26 8.14 -51.93 -0.42 0.83 14 LS Contribution 209.18 15.07 3.15 3.15 Total: -1.00 -31.79 209.18 -4.47 -36.26 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -2.72 Total: 7.96 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -0.51 Total: -13.05 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.77 Total: -42.90 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.14 Total: -8.55 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -31.79 -4.47 -36.26 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575456409.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.857 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds