Wall clock time and date at job start Mon Mar 30 2020 02:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32600 * 1 3 3 C 1.47817 * 120.00151 * 2 1 4 4 C 1.41352 * 126.23701 * 359.95263 * 3 2 1 5 5 N 1.30682 * 108.26008 * 179.75727 * 4 3 2 6 6 N 1.40007 * 108.66045 * 0.44307 * 5 4 3 7 7 C 1.37292 * 125.93980 * 179.81386 * 6 5 4 8 8 H 1.08002 * 119.99835 * 179.68876 * 7 6 5 9 9 C 1.39003 * 119.99759 * 359.97031 * 7 6 5 10 10 N 1.31284 * 120.00043 * 359.72313 * 9 7 6 11 11 Si 1.86801 * 119.99884 * 179.72358 * 9 7 6 12 12 H 1.48504 * 109.46920 * 59.99981 * 11 9 7 13 13 H 1.48504 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47038 * 299.99751 * 11 9 7 15 15 C 1.36050 * 108.12570 * 359.54878 * 6 5 4 16 16 H 1.08006 * 119.99612 * 0.02562 * 1 2 3 17 17 H 1.07994 * 120.00347 * 180.02562 * 1 2 3 18 18 H 1.08001 * 120.00091 * 179.97438 * 2 1 3 19 19 H 1.07997 * 125.86993 * 0.02562 * 4 3 2 20 20 H 0.96995 * 119.99907 * 180.02562 * 10 9 7 21 21 H 1.08000 * 126.28568 * 180.23630 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0651 1.2801 0.0000 4 6 1.4956 2.5738 -0.0009 5 7 2.4664 3.4486 0.0046 6 7 3.6871 2.7631 -0.0009 7 6 4.9340 3.3377 -0.0012 8 1 5.8159 2.7143 -0.0006 9 6 5.0613 4.7219 0.0037 10 7 3.9893 5.4797 0.0032 11 14 6.7578 5.5038 0.0111 12 1 7.5038 5.0792 -1.2007 13 1 6.6213 6.9826 0.0150 14 1 7.4969 5.0713 1.2244 15 6 3.4231 1.4285 0.0001 16 1 -0.5400 0.9354 -0.0004 17 1 -0.5400 -0.9352 0.0004 18 1 1.8660 -0.9353 0.0004 19 1 0.4396 2.8003 -0.0014 20 1 4.0781 6.4456 0.0062 21 1 4.1531 0.6325 0.0003 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585143027.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:33 Heat of formation + Delta-G solvation = 90.142022 kcal Electronic energy + Delta-G solvation = -8583.490890 eV Core-core repulsion = 6847.634108 eV Total energy + Delta-G solvation = -1735.856782 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 164.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.40231 -33.96631 -32.51787 -30.21038 -27.74738 -24.86389 -21.11216 -20.32555 -18.65835 -16.76338 -15.52890 -14.61741 -13.83038 -13.29863 -13.03050 -12.47721 -11.76721 -11.26134 -11.18985 -10.81754 -10.69161 -10.42443 -9.87085 -9.06948 -8.73915 -8.14192 -6.80788 -6.60319 -4.29494 2.66284 3.02158 3.03102 3.06699 3.74857 3.80929 4.61584 4.71541 5.00394 5.81413 6.06458 6.22320 6.51114 6.72913 6.85176 7.10498 7.22498 7.51911 7.82229 7.85750 8.16574 8.64281 9.34866 9.60866 10.35807 Molecular weight = 164.06amu Principal moments of inertia in cm(-1) A = 0.139486 B = 0.013114 C = 0.012037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 200.688479 B = 2134.669875 C = 2325.511993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.028 4.028 3 C -0.266 4.266 4 C -0.020 4.020 5 N -0.266 5.266 6 N -0.146 5.146 7 C -0.330 4.330 8 H 0.117 0.883 9 C 0.047 3.953 10 N -0.772 5.772 11 Si 0.936 3.064 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.266 1.266 15 C -0.046 4.046 16 H 0.089 0.911 17 H 0.083 0.917 18 H 0.096 0.904 19 H 0.153 0.847 20 H 0.276 0.724 21 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 -3.573 0.007 3.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.048 4.048 3 C -0.280 4.280 4 C -0.197 4.197 5 N -0.094 5.094 6 N 0.090 4.910 7 C -0.461 4.461 8 H 0.135 0.865 9 C -0.170 4.170 10 N -0.398 5.398 11 Si 0.759 3.241 12 H -0.191 1.191 13 H -0.201 1.201 14 H -0.191 1.191 15 C -0.197 4.197 16 H 0.107 0.893 17 H 0.102 0.898 18 H 0.114 0.886 19 H 0.170 0.830 20 H 0.086 0.914 21 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.343 -1.996 0.011 2.406 hybrid contribution 0.514 -0.565 0.004 0.764 sum 1.857 -2.561 0.016 3.164 Atomic orbital electron populations 1.23641 0.95548 1.00219 1.10685 1.20979 0.94241 0.94506 0.95025 1.18667 0.91997 0.92954 1.24375 1.23711 0.98424 0.91062 1.06521 1.78042 0.87741 1.18339 1.25233 1.44797 1.05406 1.02479 1.38291 1.19907 0.81149 0.91460 1.53630 0.86538 1.25664 0.99747 0.96351 0.95231 1.70197 1.28689 1.05672 1.35238 0.85881 0.80346 0.78297 0.79563 1.19081 1.20081 1.19085 1.22162 0.95883 0.87079 1.14607 0.89270 0.89814 0.88596 0.82956 0.91382 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.66 14.29 28.83 0.41 -4.25 14 2 C -0.03 -0.55 10.12 -37.57 -0.38 -0.93 14 3 C -0.27 -6.35 6.04 -105.38 -0.64 -6.99 14 4 C -0.02 -0.51 11.37 -16.86 -0.19 -0.70 14 5 N -0.27 -7.72 10.35 30.91 0.32 -7.40 14 6 N -0.15 -4.09 3.72 -11.30 -0.04 -4.13 14 7 C -0.33 -8.87 10.24 -14.82 -0.15 -9.02 14 8 H 0.12 2.80 7.83 -52.49 -0.41 2.39 14 9 C 0.05 1.23 5.50 -17.50 -0.10 1.13 14 10 N -0.77 -21.57 11.80 55.50 0.65 -20.92 14 11 Si 0.94 18.98 29.55 -169.99 -5.02 13.95 14 12 H -0.27 -5.24 7.11 56.52 0.40 -4.84 14 13 H -0.28 -5.52 7.11 56.52 0.40 -5.11 14 14 H -0.27 -5.24 7.11 56.52 0.40 -4.84 14 15 C -0.05 -1.13 11.42 -16.27 -0.19 -1.32 14 16 H 0.09 1.61 6.87 -52.48 -0.36 1.24 14 17 H 0.08 1.26 8.06 -52.49 -0.42 0.84 14 18 H 0.10 1.65 8.06 -52.49 -0.42 1.23 14 19 H 0.15 3.41 7.29 -52.49 -0.38 3.03 14 20 H 0.28 7.03 8.31 -40.82 -0.34 6.70 14 21 H 0.15 3.09 8.06 -52.49 -0.42 2.66 14 LS Contribution 200.19 15.07 3.02 3.02 Total: -1.00 -30.40 200.19 -3.86 -34.26 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -1.56 Total: 3.29 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -1.23 Total: -22.08 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.93 Total: -32.45 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -30.40 -3.86 -34.26 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585143027.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.405 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds