Wall clock time and date at job start Mon Mar 30 2020 02:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32600 * 1 3 3 C 1.47817 * 120.00151 * 2 1 4 4 C 1.41352 * 126.23701 * 359.95263 * 3 2 1 5 5 N 1.30682 * 108.26008 * 179.75727 * 4 3 2 6 6 N 1.40007 * 108.66045 * 0.44307 * 5 4 3 7 7 C 1.37292 * 125.93980 * 179.81386 * 6 5 4 8 8 H 1.08002 * 119.99835 * 179.68876 * 7 6 5 9 9 C 1.39003 * 119.99759 * 359.97031 * 7 6 5 10 10 N 1.31284 * 120.00043 * 359.72313 * 9 7 6 11 11 Si 1.86801 * 119.99884 * 179.72358 * 9 7 6 12 12 H 1.48504 * 109.46920 * 59.99981 * 11 9 7 13 13 H 1.48504 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47038 * 299.99751 * 11 9 7 15 15 C 1.36050 * 108.12570 * 359.54878 * 6 5 4 16 16 H 1.08006 * 119.99612 * 0.02562 * 1 2 3 17 17 H 1.07994 * 120.00347 * 180.02562 * 1 2 3 18 18 H 1.08001 * 120.00091 * 179.97438 * 2 1 3 19 19 H 1.07997 * 125.86993 * 0.02562 * 4 3 2 20 20 H 0.96995 * 119.99907 * 180.02562 * 10 9 7 21 21 H 1.08000 * 126.28568 * 180.23630 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0651 1.2801 0.0000 4 6 1.4956 2.5738 -0.0009 5 7 2.4664 3.4486 0.0046 6 7 3.6871 2.7631 -0.0009 7 6 4.9340 3.3377 -0.0012 8 1 5.8159 2.7143 -0.0006 9 6 5.0613 4.7219 0.0037 10 7 3.9893 5.4797 0.0032 11 14 6.7578 5.5038 0.0111 12 1 7.5038 5.0792 -1.2007 13 1 6.6213 6.9826 0.0150 14 1 7.4969 5.0713 1.2244 15 6 3.4231 1.4285 0.0001 16 1 -0.5400 0.9354 -0.0004 17 1 -0.5400 -0.9352 0.0004 18 1 1.8660 -0.9353 0.0004 19 1 0.4396 2.8003 -0.0014 20 1 4.0781 6.4456 0.0062 21 1 4.1531 0.6325 0.0003 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585143027.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:33 Heat of formation + Delta-G solvation = 70.812585 kcal Electronic energy + Delta-G solvation = -8584.329077 eV Core-core repulsion = 6847.634108 eV Total energy + Delta-G solvation = -1736.694969 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 164.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.33586 -35.80154 -34.22799 -32.16684 -29.59530 -26.79382 -22.87729 -22.19428 -20.49713 -18.58772 -17.46922 -16.26208 -15.40057 -15.28454 -14.94540 -14.11327 -13.54339 -13.04757 -12.89113 -12.59225 -12.23491 -12.03373 -11.58994 -10.81455 -10.67018 -10.14972 -8.62587 -8.50889 -6.30412 1.03534 1.37811 1.44374 1.54093 1.87698 2.12058 2.80333 2.82168 3.07720 4.22718 4.37863 4.61983 4.84567 4.93138 5.09299 5.27453 5.47912 5.91575 5.93773 6.26405 6.29102 6.73240 7.43025 7.64275 8.48546 Molecular weight = 164.06amu Principal moments of inertia in cm(-1) A = 0.139486 B = 0.013114 C = 0.012037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 200.688479 B = 2134.669875 C = 2325.511993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.058 4.058 3 C -0.261 4.261 4 C -0.041 4.041 5 N -0.317 5.317 6 N -0.175 5.175 7 C -0.366 4.366 8 H 0.137 0.863 9 C -0.005 4.005 10 N -0.824 5.824 11 Si 1.020 2.980 12 H -0.254 1.254 13 H -0.274 1.274 14 H -0.254 1.254 15 C -0.057 4.057 16 H 0.083 0.917 17 H 0.121 0.879 18 H 0.125 0.875 19 H 0.173 0.827 20 H 0.278 0.722 21 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 -5.015 0.010 5.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.077 4.077 3 C -0.275 4.275 4 C -0.217 4.217 5 N -0.145 5.145 6 N 0.060 4.940 7 C -0.496 4.496 8 H 0.154 0.846 9 C -0.216 4.216 10 N -0.452 5.452 11 Si 0.838 3.162 12 H -0.178 1.178 13 H -0.199 1.199 14 H -0.178 1.178 15 C -0.207 4.207 16 H 0.101 0.899 17 H 0.139 0.861 18 H 0.142 0.858 19 H 0.190 0.810 20 H 0.087 0.913 21 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.691 -3.478 0.014 3.867 hybrid contribution 0.194 -0.297 0.003 0.354 sum 1.885 -3.775 0.017 4.219 Atomic orbital electron populations 1.24012 0.95020 1.01768 1.05820 1.21131 0.94995 0.93671 0.97910 1.19201 0.92007 0.94140 1.22139 1.24164 0.99032 0.91792 1.06752 1.77918 0.88995 1.20543 1.27072 1.45072 1.05426 1.03491 1.40028 1.20599 0.81694 0.92672 1.54681 0.84609 1.26882 1.04354 0.96494 0.93892 1.70365 1.31608 1.05988 1.37204 0.84652 0.74430 0.76878 0.80240 1.17801 1.19914 1.17815 1.22878 0.97292 0.86936 1.13582 0.89855 0.86110 0.85750 0.80983 0.91272 0.80474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -7.20 14.29 66.66 0.95 -6.25 14 2 C -0.06 -2.10 10.12 23.65 0.24 -1.86 14 3 C -0.26 -12.21 6.04 -20.36 -0.12 -12.33 14 4 C -0.04 -2.10 11.37 85.63 0.97 -1.12 14 5 N -0.32 -18.90 10.35 -56.11 -0.58 -19.48 14 6 N -0.17 -9.96 3.72 -189.66 -0.71 -10.66 14 7 C -0.37 -19.95 10.24 84.02 0.86 -19.09 14 8 H 0.14 6.50 7.83 -2.91 -0.02 6.48 14 9 C 0.00 -0.24 5.50 84.96 0.47 0.23 14 10 N -0.82 -47.57 11.80 21.66 0.26 -47.31 14 11 Si 1.02 38.94 29.55 68.60 2.03 40.97 14 12 H -0.25 -9.10 7.11 99.48 0.71 -8.40 14 13 H -0.27 -10.25 7.11 99.48 0.71 -9.54 14 14 H -0.25 -9.11 7.11 99.48 0.71 -8.41 14 15 C -0.06 -2.77 11.42 83.66 0.96 -1.81 14 16 H 0.08 2.74 6.87 -2.91 -0.02 2.72 14 17 H 0.12 2.97 8.06 -2.91 -0.02 2.95 14 18 H 0.12 3.78 8.06 -2.91 -0.02 3.76 14 19 H 0.17 7.72 7.29 -2.91 -0.02 7.70 14 20 H 0.28 14.67 8.31 -92.71 -0.77 13.90 14 21 H 0.18 7.21 8.06 -2.91 -0.02 7.18 14 Total: -1.00 -66.92 200.19 6.54 -60.38 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 1.22 Total: 18.35 kcal Atomic # 6 Polarization: -46.57 SS G_CDS: 4.33 Total: -42.24 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -1.03 Total: -77.46 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -66.92 6.54 -60.38 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585143027.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.196 kcal (2) G-P(sol) polarization free energy of solvation -66.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds