Wall clock time and date at job start Mon Mar 30 2020 02:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 H 1.09003 * 115.54677 * 330.67256 * 10 9 7 12 12 C 1.52995 * 117.50187 * 184.99865 * 10 9 7 13 13 C 1.52999 * 117.49915 * 116.37432 * 10 9 7 14 14 F 1.39898 * 117.50270 * 214.98034 * 13 10 9 15 15 F 1.39903 * 117.49812 * 0.02562 * 13 10 9 16 16 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 17 17 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 18 18 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 19 19 H 1.09001 * 117.49593 * 359.97438 * 12 10 9 20 20 H 1.08997 * 117.50282 * 144.99795 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0215 -2.6366 -0.0171 11 1 3.3718 -3.3666 0.4659 12 6 5.5320 -2.8523 0.0944 13 6 4.8203 -3.0993 -1.2373 14 9 4.6611 -4.4271 -1.6481 15 9 5.0289 -2.1708 -2.2627 16 1 -0.4849 0.8401 0.0041 17 1 3.8711 -0.6782 -0.9024 18 1 3.8785 -0.6825 0.8776 19 1 6.1626 -1.9665 0.1709 20 1 5.8763 -3.7241 0.6507 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606244027.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:55 Heat of formation + Delta-G solvation = -81.202027 kcal Electronic energy + Delta-G solvation = -8922.106052 eV Core-core repulsion = 6755.441527 eV Total energy + Delta-G solvation = -2166.664525 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 162.055 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -48.09792 -46.78446 -36.24294 -32.66228 -29.03226 -23.13659 -22.05370 -19.97328 -17.35873 -16.73501 -15.91831 -15.29752 -14.31878 -13.49520 -13.20222 -13.04504 -12.99387 -12.36592 -12.27664 -11.35318 -10.89360 -10.64993 -10.12643 -9.65200 -9.30126 -9.14426 -8.58302 -6.09398 -4.08799 3.29037 3.36128 3.37806 3.52956 3.85573 4.40540 4.88522 4.96523 5.18265 5.28257 5.73908 6.18704 6.23410 6.43173 7.06049 7.16694 7.67014 8.45069 8.93341 9.51002 11.03714 Molecular weight = 162.06amu Principal moments of inertia in cm(-1) A = 0.075901 B = 0.015635 C = 0.014708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.810772 B = 1790.441155 C = 1903.226719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.075 0.925 9 C 0.005 3.995 10 C -0.105 4.105 11 H 0.124 0.876 12 C -0.192 4.192 13 C 0.179 3.821 14 F -0.173 7.173 15 F -0.163 7.163 16 H 0.264 0.736 17 H 0.027 0.973 18 H 0.034 0.966 19 H 0.114 0.886 20 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.769 -3.130 0.177 10.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.093 0.907 9 C -0.032 4.032 10 C -0.124 4.124 11 H 0.142 0.858 12 C -0.230 4.230 13 C 0.142 3.858 14 F -0.153 7.153 15 F -0.144 7.144 16 H 0.074 0.926 17 H 0.045 0.955 18 H 0.052 0.948 19 H 0.132 0.868 20 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.608 -3.023 0.124 10.073 hybrid contribution 0.384 0.758 -0.319 0.907 sum 9.992 -2.265 -0.195 10.247 Atomic orbital electron populations 1.69906 1.06281 1.27045 1.50572 1.24995 0.94776 0.99165 0.94363 0.86787 0.80313 0.83574 0.78712 1.20080 1.21208 1.18957 1.21039 0.88733 0.94791 1.51532 0.90725 1.19310 0.97886 0.88340 0.97632 1.23861 0.92064 1.03021 0.93410 0.85820 1.24420 0.98630 1.04779 0.95139 1.20281 1.11167 0.73246 0.81092 1.92955 1.96342 1.33866 1.92157 1.92963 1.95516 1.64085 1.61809 0.92568 0.95489 0.94785 0.86807 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.85 14 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 14 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 14 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 14 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 14 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 14 7 C -0.52 -14.83 9.63 -34.44 -0.33 -15.16 14 8 H 0.07 2.26 7.92 -52.49 -0.42 1.85 14 9 C 0.01 0.13 4.31 -27.89 -0.12 0.01 14 10 C -0.10 -2.06 5.68 -90.62 -0.51 -2.57 14 11 H 0.12 2.38 8.00 -51.93 -0.42 1.97 14 12 C -0.19 -2.95 10.22 -26.73 -0.27 -3.23 14 13 C 0.18 3.36 5.20 -26.73 -0.14 3.22 14 14 F -0.17 -3.22 17.60 2.25 0.04 -3.18 14 15 F -0.16 -3.32 16.48 2.25 0.04 -3.29 14 16 H 0.26 7.58 8.31 -40.82 -0.34 7.24 14 17 H 0.03 0.65 6.49 -51.93 -0.34 0.31 14 18 H 0.03 0.78 7.20 -51.93 -0.37 0.40 14 19 H 0.11 1.60 8.14 -51.93 -0.42 1.18 14 20 H 0.11 1.40 8.14 -51.93 -0.42 0.98 14 LS Contribution 190.97 15.07 2.88 2.88 Total: -1.00 -30.09 190.97 -3.97 -34.06 By element: Atomic # 1 Polarization: -3.05 SS G_CDS: -1.55 Total: -4.61 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -1.48 Total: -15.83 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 0.77 Total: -26.85 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.08 Total: -6.47 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 2.88 Total: 2.88 kcal Total: -30.09 -3.97 -34.06 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606244027.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.139 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds