Wall clock time and date at job start Mon Mar 30 2020 02:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 H 1.09003 * 115.54677 * 330.67256 * 10 9 7 12 12 C 1.52995 * 117.50187 * 184.99865 * 10 9 7 13 13 C 1.52999 * 117.49915 * 116.37432 * 10 9 7 14 14 F 1.39898 * 117.50270 * 214.98034 * 13 10 9 15 15 F 1.39903 * 117.49812 * 0.02562 * 13 10 9 16 16 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 17 17 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 18 18 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 19 19 H 1.09001 * 117.49593 * 359.97438 * 12 10 9 20 20 H 1.08997 * 117.50282 * 144.99795 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0215 -2.6366 -0.0171 11 1 3.3718 -3.3666 0.4659 12 6 5.5320 -2.8523 0.0944 13 6 4.8203 -3.0993 -1.2373 14 9 4.6611 -4.4271 -1.6481 15 9 5.0289 -2.1708 -2.2627 16 1 -0.4849 0.8401 0.0041 17 1 3.8711 -0.6782 -0.9024 18 1 3.8785 -0.6825 0.8776 19 1 6.1626 -1.9665 0.1709 20 1 5.8763 -3.7241 0.6507 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606244027.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:55 Heat of formation + Delta-G solvation = -100.389491 kcal Electronic energy + Delta-G solvation = -8922.938083 eV Core-core repulsion = 6755.441527 eV Total energy + Delta-G solvation = -2167.496556 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 162.055 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -49.57241 -48.27319 -37.76749 -34.78837 -30.98704 -25.10094 -23.41389 -21.61495 -19.16293 -18.53736 -17.46290 -16.80033 -16.34000 -14.98218 -14.88075 -14.65637 -14.49313 -14.17231 -13.96529 -13.19611 -12.55746 -12.43982 -11.85132 -11.64305 -11.21058 -10.83157 -10.58301 -8.31109 -6.36556 1.37623 1.38957 1.50280 2.15215 2.35236 2.40426 3.05518 3.47027 3.57708 3.79020 4.52868 4.68006 4.77630 4.95086 5.22420 5.34644 5.58556 6.22236 6.69873 7.27386 8.85646 Molecular weight = 162.06amu Principal moments of inertia in cm(-1) A = 0.075901 B = 0.015635 C = 0.014708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.810772 B = 1790.441155 C = 1903.226719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.237 1.237 7 C -0.536 4.536 8 H 0.032 0.968 9 C 0.010 3.990 10 C -0.137 4.137 11 H 0.118 0.882 12 C -0.135 4.135 13 C 0.157 3.843 14 F -0.176 7.176 15 F -0.176 7.176 16 H 0.267 0.733 17 H 0.025 0.975 18 H 0.049 0.951 19 H 0.137 0.863 20 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.260 -2.486 0.776 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.159 1.159 7 C -0.574 4.574 8 H 0.051 0.949 9 C -0.027 4.027 10 C -0.156 4.156 11 H 0.136 0.864 12 C -0.172 4.172 13 C 0.121 3.879 14 F -0.156 7.156 15 F -0.157 7.157 16 H 0.076 0.924 17 H 0.043 0.957 18 H 0.067 0.933 19 H 0.155 0.845 20 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.119 -2.401 0.728 12.376 hybrid contribution -0.470 0.457 -0.520 0.837 sum 11.649 -1.944 0.207 11.812 Atomic orbital electron populations 1.70068 1.08407 1.28327 1.52284 1.26039 0.95675 1.03687 0.93903 0.85651 0.79907 0.77968 0.79140 1.19657 1.20743 1.15947 1.21422 0.91699 0.93311 1.50954 0.94937 1.19170 0.94348 0.91271 0.97954 1.23683 0.95607 1.00721 0.95597 0.86427 1.24572 0.94848 1.06884 0.90930 1.20632 1.12817 0.72947 0.81527 1.92945 1.96525 1.33906 1.92259 1.92932 1.95598 1.64589 1.62547 0.92367 0.95658 0.93324 0.84476 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.91 13.96 21.45 0.30 -59.61 14 2 C 0.00 0.23 5.47 84.66 0.46 0.69 14 3 Si 0.95 43.62 27.47 68.60 1.88 45.51 14 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 14 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 14 6 H -0.24 -9.69 6.54 99.48 0.65 -9.04 14 7 C -0.54 -30.94 9.63 25.60 0.25 -30.69 14 8 H 0.03 2.07 7.92 -2.91 -0.02 2.05 14 9 C 0.01 0.44 4.31 29.85 0.13 0.57 14 10 C -0.14 -5.16 5.68 -10.80 -0.06 -5.22 14 11 H 0.12 4.50 8.00 -2.39 -0.02 4.48 14 12 C -0.14 -3.54 10.22 30.59 0.31 -3.23 14 13 C 0.16 5.58 5.20 30.59 0.16 5.74 14 14 F -0.18 -6.30 17.60 44.97 0.79 -5.51 14 15 F -0.18 -6.87 16.48 44.97 0.74 -6.13 14 16 H 0.27 15.66 8.31 -92.71 -0.77 14.89 14 17 H 0.03 1.16 6.49 -2.39 -0.02 1.15 14 18 H 0.05 2.07 7.20 -2.39 -0.02 2.05 14 19 H 0.14 3.05 8.14 -2.39 -0.02 3.03 14 20 H 0.15 2.86 8.14 -2.39 -0.02 2.84 14 Total: -1.00 -66.01 190.97 6.15 -59.87 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: 1.18 Total: -1.99 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 1.25 Total: -32.14 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.30 Total: -59.61 kcal Atomic # 9 Polarization: -13.17 SS G_CDS: 1.53 Total: -11.64 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.51 kcal Total: -66.01 6.15 -59.87 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606244027.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.523 kcal (2) G-P(sol) polarization free energy of solvation -66.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds