Wall clock time and date at job start Mon Mar 30 2020 01:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00049 * 2 1 4 4 H 1.48507 * 109.47111 * 274.98669 * 3 2 1 5 5 H 1.48499 * 109.47436 * 34.98881 * 3 2 1 6 6 H 1.48501 * 109.47274 * 154.99213 * 3 2 1 7 7 C 1.38816 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99940 * 185.02450 * 7 2 1 9 9 N 1.36939 * 120.00008 * 4.74460 * 7 2 1 10 10 C 1.47069 * 136.05417 * 353.88763 * 9 7 2 11 11 C 1.53500 * 87.97957 * 207.07904 * 10 9 7 12 12 C 1.47067 * 136.05825 * 173.50584 * 9 7 2 13 13 H 1.09002 * 113.46956 * 267.70384 * 12 9 7 14 14 C 1.53001 * 113.46544 * 38.13994 * 12 9 7 15 15 O 1.42905 * 109.47037 * 275.49598 * 14 12 9 16 16 H 0.96997 * 120.00148 * 359.97438 * 1 2 3 17 17 H 1.08997 * 113.47016 * 321.85216 * 10 9 7 18 18 H 1.08995 * 113.47115 * 92.29984 * 10 9 7 19 19 H 1.08996 * 114.20859 * 87.51915 * 11 10 9 20 20 H 1.09006 * 114.20309 * 220.14734 * 11 10 9 21 21 H 1.08999 * 109.47444 * 35.49417 * 14 12 9 22 22 H 1.08997 * 109.46982 * 155.49527 * 14 12 9 23 23 H 0.96701 * 113.99484 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3922 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2040 0.0814 9 7 1.3291 -2.3860 -0.0992 10 6 -0.0828 -2.7977 -0.1089 11 6 0.3651 -4.1537 0.4541 12 6 1.6872 -3.8046 -0.2487 13 1 1.7275 -4.1350 -1.2867 14 6 2.9289 -4.2069 0.5496 15 8 4.1016 -3.9047 -0.2091 16 1 -0.4850 0.8400 0.0004 17 1 -0.7062 -2.2267 0.5791 18 1 -0.5091 -2.8628 -1.1099 19 1 0.4286 -4.1871 1.5417 20 1 -0.1571 -5.0096 0.0265 21 1 2.9516 -3.6545 1.4890 22 1 2.8963 -5.2763 0.7577 23 1 4.9284 -4.1343 0.2367 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198111544.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:12 Heat of formation + Delta-G solvation = 5.118628 kcal Electronic energy + Delta-G solvation = -8782.098905 eV Core-core repulsion = 7018.439753 eV Total energy + Delta-G solvation = -1763.659151 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.22339 -35.61516 -32.11224 -27.91104 -27.39254 -23.37264 -21.72027 -19.15928 -16.99289 -16.22727 -15.09081 -14.49535 -13.86992 -13.54804 -12.31146 -12.14845 -11.51125 -10.97548 -10.72176 -10.64560 -10.46437 -9.88394 -9.75477 -9.47918 -9.05740 -8.70047 -6.77368 -5.68045 -2.98268 3.45624 3.50618 3.52735 4.53049 4.82624 5.31898 5.53044 5.70954 5.87886 6.05769 6.14775 6.26577 6.47952 6.68779 6.85334 7.33823 7.46587 7.68793 8.07441 8.20126 9.16422 9.81021 10.75857 11.50517 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.060634 B = 0.020895 C = 0.016091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.673280 B = 1339.734576 C = 1739.710899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.206 4.206 8 H 0.083 0.917 9 N -0.601 5.601 10 C 0.153 3.847 11 C -0.164 4.164 12 C 0.140 3.860 13 H 0.048 0.952 14 C 0.076 3.924 15 O -0.568 6.568 16 H 0.252 0.748 17 H 0.068 0.932 18 H 0.025 0.975 19 H 0.077 0.923 20 H 0.058 0.942 21 H 0.049 0.951 22 H 0.034 0.966 23 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.142 -7.226 1.889 8.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.333 4.333 8 H 0.101 0.899 9 N -0.326 5.326 10 C 0.027 3.973 11 C -0.203 4.203 12 C 0.033 3.967 13 H 0.065 0.935 14 C -0.003 4.003 15 O -0.371 6.371 16 H 0.062 0.938 17 H 0.087 0.913 18 H 0.043 0.957 19 H 0.095 0.905 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.052 0.948 23 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.725 -6.630 1.488 7.321 hybrid contribution 0.847 0.722 0.229 1.136 sum 3.572 -5.908 1.717 7.114 Atomic orbital electron populations 1.69854 1.05028 1.25147 1.57031 1.24838 0.95699 0.97469 1.02934 0.86111 0.78696 0.83629 0.77477 1.21714 1.21836 1.20595 1.19014 0.90800 0.81461 1.42041 0.89901 1.45790 1.02419 1.00312 1.84124 1.21969 0.88729 0.89148 0.97432 1.23756 0.97425 0.98988 1.00136 1.22224 0.90660 0.87421 0.96412 0.93475 1.22657 0.85835 0.96707 0.95110 1.86610 1.15745 1.87679 1.47094 0.93822 0.91327 0.95677 0.90450 0.92377 0.93265 0.94783 0.79168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.57 11.62 55.49 0.64 -27.92 14 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 14 3 Si 0.91 23.14 29.56 -169.99 -5.02 18.11 14 4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 14 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 14 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 14 7 C -0.21 -6.11 10.55 -15.06 -0.16 -6.27 14 8 H 0.08 2.43 7.83 -52.49 -0.41 2.02 14 9 N -0.60 -16.40 3.65 -176.82 -0.64 -17.04 14 10 C 0.15 3.79 7.31 -8.50 -0.06 3.73 14 11 C -0.16 -3.22 8.04 -26.08 -0.21 -3.42 14 12 C 0.14 3.10 4.36 -72.25 -0.32 2.79 14 13 H 0.05 1.07 8.14 -51.93 -0.42 0.65 14 14 C 0.08 1.44 6.91 37.16 0.26 1.70 14 15 O -0.57 -10.94 13.66 -35.23 -0.48 -11.42 14 16 H 0.25 7.51 8.31 -40.82 -0.34 7.18 14 17 H 0.07 1.84 7.31 -51.93 -0.38 1.46 14 18 H 0.03 0.63 8.14 -51.93 -0.42 0.21 14 19 H 0.08 1.44 8.13 -51.93 -0.42 1.02 14 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 14 21 H 0.05 0.98 8.14 -51.93 -0.42 0.56 14 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 14 23 H 0.36 4.87 9.12 45.56 0.42 5.28 14 LS Contribution 203.87 15.07 3.07 3.07 Total: -1.00 -33.57 203.87 -5.06 -38.64 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -2.05 Total: -1.45 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.59 Total: -1.98 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.00 Total: -44.97 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.48 Total: -11.42 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -33.57 -5.06 -38.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198111544.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.754 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds