Wall clock time and date at job start Mon Mar 30 2020 01:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00049 * 2 1 4 4 H 1.48507 * 109.47111 * 274.98669 * 3 2 1 5 5 H 1.48499 * 109.47436 * 34.98881 * 3 2 1 6 6 H 1.48501 * 109.47274 * 154.99213 * 3 2 1 7 7 C 1.38816 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99940 * 185.02450 * 7 2 1 9 9 N 1.36939 * 120.00008 * 4.74460 * 7 2 1 10 10 C 1.47069 * 136.05417 * 353.88763 * 9 7 2 11 11 C 1.53500 * 87.97957 * 207.07904 * 10 9 7 12 12 C 1.47067 * 136.05825 * 173.50584 * 9 7 2 13 13 H 1.09002 * 113.46956 * 267.70384 * 12 9 7 14 14 C 1.53001 * 113.46544 * 38.13994 * 12 9 7 15 15 O 1.42905 * 109.47037 * 275.49598 * 14 12 9 16 16 H 0.96997 * 120.00148 * 359.97438 * 1 2 3 17 17 H 1.08997 * 113.47016 * 321.85216 * 10 9 7 18 18 H 1.08995 * 113.47115 * 92.29984 * 10 9 7 19 19 H 1.08996 * 114.20859 * 87.51915 * 11 10 9 20 20 H 1.09006 * 114.20309 * 220.14734 * 11 10 9 21 21 H 1.08999 * 109.47444 * 35.49417 * 14 12 9 22 22 H 1.08997 * 109.46982 * 155.49527 * 14 12 9 23 23 H 0.96701 * 113.99484 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3922 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2040 0.0814 9 7 1.3291 -2.3860 -0.0992 10 6 -0.0828 -2.7977 -0.1089 11 6 0.3651 -4.1537 0.4541 12 6 1.6872 -3.8046 -0.2487 13 1 1.7275 -4.1350 -1.2867 14 6 2.9289 -4.2069 0.5496 15 8 4.1016 -3.9047 -0.2091 16 1 -0.4850 0.8400 0.0004 17 1 -0.7062 -2.2267 0.5791 18 1 -0.5091 -2.8628 -1.1099 19 1 0.4286 -4.1871 1.5417 20 1 -0.1571 -5.0096 0.0265 21 1 2.9516 -3.6545 1.4890 22 1 2.8963 -5.2763 0.7577 23 1 4.9284 -4.1343 0.2367 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198111544.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:12 Heat of formation + Delta-G solvation = -21.320914 kcal Electronic energy + Delta-G solvation = -8783.245409 eV Core-core repulsion = 7018.439753 eV Total energy + Delta-G solvation = -1764.805656 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.00732 -37.13663 -34.28790 -29.95471 -29.07239 -25.41677 -23.44460 -21.02910 -18.78808 -17.93771 -17.08780 -16.22451 -15.74078 -15.36272 -14.10209 -13.88557 -13.46275 -12.97231 -12.66787 -12.35083 -12.25713 -11.88473 -11.65156 -11.10633 -10.89425 -10.72694 -8.90000 -7.91135 -5.22585 1.42532 1.45844 1.54666 2.47108 3.21046 3.41393 3.62097 3.98470 4.36378 4.44940 4.60405 4.68881 4.92351 5.02056 5.08667 5.33087 5.54452 5.71274 5.95456 6.93018 7.02977 7.61820 8.63965 9.27548 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.060634 B = 0.020895 C = 0.016091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.673280 B = 1339.734576 C = 1739.710899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.075 4.075 3 Si 0.978 3.022 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.635 5.635 10 C 0.141 3.859 11 C -0.127 4.127 12 C 0.129 3.871 13 H 0.043 0.957 14 C 0.083 3.917 15 O -0.593 6.593 16 H 0.248 0.752 17 H 0.037 0.963 18 H 0.015 0.985 19 H 0.090 0.910 20 H 0.100 0.900 21 H 0.036 0.964 22 H 0.080 0.920 23 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.094 -8.365 2.295 9.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.267 4.267 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.361 5.361 10 C 0.016 3.984 11 C -0.165 4.165 12 C 0.023 3.977 13 H 0.061 0.939 14 C 0.004 3.996 15 O -0.400 6.400 16 H 0.057 0.943 17 H 0.056 0.944 18 H 0.032 0.968 19 H 0.108 0.892 20 H 0.119 0.881 21 H 0.054 0.946 22 H 0.098 0.902 23 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.712 -7.813 1.904 8.857 hybrid contribution 0.574 1.002 0.076 1.157 sum 4.286 -6.811 1.979 8.288 Atomic orbital electron populations 1.70035 1.06450 1.25521 1.58553 1.25699 0.96662 1.00919 1.03461 0.85053 0.77904 0.79162 0.77243 1.21675 1.21746 1.19161 1.19285 0.90938 0.83032 1.41156 0.90306 1.46197 1.03802 1.01756 1.84350 1.22031 0.87653 0.92150 0.96607 1.23515 0.95155 0.97127 1.00672 1.22484 0.93681 0.84511 0.97020 0.93945 1.22506 0.84566 0.99102 0.93405 1.86535 1.17183 1.88218 1.48112 0.94341 0.94419 0.96753 0.89154 0.88129 0.94584 0.90158 0.76217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.48 11.62 21.65 0.25 -60.23 14 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 14 3 Si 0.98 48.03 29.56 68.60 2.03 50.06 14 4 H -0.29 -14.09 7.11 99.48 0.71 -13.38 14 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 14 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 14 7 C -0.22 -12.89 10.55 84.03 0.89 -12.01 14 8 H 0.08 4.63 7.83 -2.91 -0.02 4.61 14 9 N -0.63 -34.61 3.65 -713.34 -2.60 -37.21 14 10 C 0.14 7.02 7.31 83.18 0.61 7.62 14 11 C -0.13 -4.60 8.04 31.02 0.25 -4.35 14 12 C 0.13 5.46 4.36 41.88 0.18 5.64 14 13 H 0.04 1.85 8.14 -2.39 -0.02 1.84 14 14 C 0.08 2.90 6.91 71.98 0.50 3.40 14 15 O -0.59 -21.41 13.66 -148.98 -2.04 -23.44 14 16 H 0.25 15.13 8.31 -92.71 -0.77 14.36 14 17 H 0.04 2.07 7.31 -2.39 -0.02 2.05 14 18 H 0.01 0.74 8.14 -2.39 -0.02 0.72 14 19 H 0.09 3.07 8.13 -2.39 -0.02 3.05 14 20 H 0.10 2.84 8.14 -2.38 -0.02 2.82 14 21 H 0.04 1.35 8.14 -2.39 -0.02 1.33 14 22 H 0.08 2.10 8.14 -2.39 -0.02 2.09 14 23 H 0.39 9.31 9.12 -74.06 -0.68 8.63 14 Total: -1.00 -72.56 203.87 1.05 -71.51 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 0.52 Total: 3.06 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 2.89 Total: -3.74 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -2.35 Total: -97.44 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -2.04 Total: -23.44 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -72.56 1.05 -71.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198111544.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.187 kcal (2) G-P(sol) polarization free energy of solvation -72.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds