Wall clock time and date at job start Mon Mar 30 2020 01:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99767 * 2 1 4 4 H 1.48504 * 109.46958 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46962 * 299.99762 * 3 2 1 6 6 H 1.48500 * 109.46989 * 60.00242 * 3 2 1 7 7 C 1.37876 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00509 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99621 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47063 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47362 * 180.02562 * 10 9 7 12 12 C 1.36890 * 126.39499 * 269.96938 * 11 10 9 13 13 C 1.34669 * 106.81617 * 180.02562 * 12 11 10 14 14 N 1.34134 * 108.02026 * 0.02562 * 13 12 11 15 15 C 1.30493 * 109.25480 * 0.02562 * 14 13 12 16 16 H 0.96993 * 120.00267 * 359.97438 * 1 2 3 17 17 H 1.09004 * 109.47609 * 59.99966 * 9 7 2 18 18 H 1.09005 * 109.47570 * 299.99913 * 9 7 2 19 19 H 1.09000 * 109.47395 * 59.99876 * 10 9 7 20 20 H 1.08994 * 109.47038 * 300.00030 * 10 9 7 21 21 H 1.07996 * 126.59258 * 0.08195 * 12 11 10 22 22 H 1.08002 * 125.99042 * 180.26007 * 13 12 11 23 23 H 1.08006 * 125.64594 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 1.1070 -5.6348 1.1004 13 6 0.4731 -6.7337 0.6486 14 7 0.4920 -6.7018 -0.6923 15 6 1.1139 -5.6252 -1.0884 16 1 -0.4850 0.8400 0.0004 17 1 0.6241 -2.5567 -0.8903 18 1 0.6248 -2.5571 0.8897 19 1 2.8721 -3.6043 0.8894 20 1 2.8720 -3.6042 -0.8905 21 1 1.2640 -5.3611 2.1332 22 1 0.0245 -7.5037 1.2588 23 1 1.2806 -5.3366 -2.1157 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019474739.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:23 Heat of formation + Delta-G solvation = 47.187239 kcal Electronic energy + Delta-G solvation = -8863.272895 eV Core-core repulsion = 7098.241975 eV Total energy + Delta-G solvation = -1765.030919 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.42178 -34.63969 -32.61392 -29.50744 -28.78002 -25.04661 -21.82838 -20.75780 -20.15337 -17.06035 -16.02010 -14.83583 -14.27859 -14.05920 -13.34078 -12.94625 -12.77742 -12.37880 -11.57913 -11.10939 -10.84056 -10.32048 -10.13514 -9.55989 -9.36654 -8.84008 -8.55610 -8.00433 -6.18978 -4.25257 2.65179 3.20590 3.28203 3.31233 3.51953 3.65551 4.31677 5.17196 5.19038 5.44833 5.50783 5.89539 6.03576 6.16458 6.40130 6.83319 7.21316 7.37932 7.46672 7.68553 7.83817 8.12007 8.57393 8.80891 9.40747 10.92082 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.119431 B = 0.010242 C = 0.010080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 234.387955 B = 2733.287868 C = 2777.227025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.102 3.898 11 N -0.443 5.443 12 C -0.054 4.054 13 C -0.048 4.048 14 N -0.510 5.510 15 C 0.175 3.825 16 H 0.264 0.736 17 H 0.024 0.976 18 H 0.023 0.977 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.167 0.833 22 H 0.162 0.838 23 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.726 -5.818 0.996 6.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.019 4.019 11 N -0.123 5.123 12 C -0.189 4.189 13 C -0.196 4.196 14 N -0.229 5.229 15 C -0.107 4.107 16 H 0.073 0.927 17 H 0.043 0.957 18 H 0.042 0.958 19 H 0.098 0.902 20 H 0.101 0.899 21 H 0.185 0.815 22 H 0.179 0.821 23 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.328 -6.136 0.471 6.996 hybrid contribution 0.690 1.668 0.594 1.901 sum 4.018 -4.468 1.065 6.103 Atomic orbital electron populations 1.69977 1.06175 1.27007 1.49496 1.25020 0.94882 0.99532 0.94741 0.86441 0.79988 0.83241 0.77781 1.19594 1.20802 1.20828 1.21039 0.93104 0.90307 1.52469 0.92154 1.19450 0.94021 0.90553 0.98532 1.22396 0.95821 0.80676 1.02988 1.45966 1.40882 1.19056 1.06426 1.22702 1.06972 0.96102 0.93141 1.22154 1.06343 0.99714 0.91436 1.70198 1.20228 1.20382 1.12083 1.24837 1.01261 0.90660 0.93978 0.92677 0.95739 0.95825 0.90179 0.89942 0.81542 0.82077 0.78487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 14 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 14 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 14 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 14 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 14 7 C -0.53 -14.10 9.11 -34.44 -0.31 -14.42 14 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 14 9 C 0.01 0.30 5.30 -27.88 -0.15 0.15 14 10 C 0.10 1.96 6.09 -4.04 -0.02 1.93 14 11 N -0.44 -8.25 2.75 -118.58 -0.33 -8.57 14 12 C -0.05 -0.93 11.58 -16.56 -0.19 -1.12 14 13 C -0.05 -0.83 11.87 -17.81 -0.21 -1.04 14 14 N -0.51 -9.78 11.25 -14.66 -0.16 -9.94 14 15 C 0.18 3.19 12.56 -90.38 -1.14 2.06 14 16 H 0.26 7.23 8.31 -40.82 -0.34 6.89 14 17 H 0.02 0.65 8.14 -51.93 -0.42 0.23 14 18 H 0.02 0.63 8.14 -51.93 -0.42 0.21 14 19 H 0.08 1.44 8.14 -51.93 -0.42 1.02 14 20 H 0.08 1.45 8.14 -51.93 -0.42 1.03 14 21 H 0.17 2.44 8.06 -52.49 -0.42 2.01 14 22 H 0.16 2.28 8.06 -52.49 -0.42 1.85 14 23 H 0.20 2.99 8.06 -52.48 -0.42 2.56 14 LS Contribution 212.91 15.07 3.21 3.21 Total: -1.00 -30.38 212.91 -6.19 -36.57 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -2.50 Total: -0.89 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.12 Total: -10.86 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.25 Total: -43.72 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -30.38 -6.19 -36.57 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019474739.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.759 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds