Wall clock time and date at job start Mon Mar 30 2020 01:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99767 * 2 1 4 4 H 1.48504 * 109.46958 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46962 * 299.99762 * 3 2 1 6 6 H 1.48500 * 109.46989 * 60.00242 * 3 2 1 7 7 C 1.37876 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00509 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99621 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47063 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47362 * 180.02562 * 10 9 7 12 12 C 1.36890 * 126.39499 * 269.96938 * 11 10 9 13 13 C 1.34669 * 106.81617 * 180.02562 * 12 11 10 14 14 N 1.34134 * 108.02026 * 0.02562 * 13 12 11 15 15 C 1.30493 * 109.25480 * 0.02562 * 14 13 12 16 16 H 0.96993 * 120.00267 * 359.97438 * 1 2 3 17 17 H 1.09004 * 109.47609 * 59.99966 * 9 7 2 18 18 H 1.09005 * 109.47570 * 299.99913 * 9 7 2 19 19 H 1.09000 * 109.47395 * 59.99876 * 10 9 7 20 20 H 1.08994 * 109.47038 * 300.00030 * 10 9 7 21 21 H 1.07996 * 126.59258 * 0.08195 * 12 11 10 22 22 H 1.08002 * 125.99042 * 180.26007 * 13 12 11 23 23 H 1.08006 * 125.64594 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 1.1070 -5.6348 1.1004 13 6 0.4731 -6.7337 0.6486 14 7 0.4920 -6.7018 -0.6923 15 6 1.1139 -5.6252 -1.0884 16 1 -0.4850 0.8400 0.0004 17 1 0.6241 -2.5567 -0.8903 18 1 0.6248 -2.5571 0.8897 19 1 2.8721 -3.6043 0.8894 20 1 2.8720 -3.6042 -0.8905 21 1 1.2640 -5.3611 2.1332 22 1 0.0245 -7.5037 1.2588 23 1 1.2806 -5.3366 -2.1157 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019474739.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:23 Heat of formation + Delta-G solvation = 29.597783 kcal Electronic energy + Delta-G solvation = -8864.035631 eV Core-core repulsion = 7098.241975 eV Total energy + Delta-G solvation = -1765.793655 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.81543 -36.37401 -34.48023 -31.25605 -30.19812 -26.89336 -23.63321 -22.13782 -21.60730 -18.87211 -17.71365 -16.67504 -15.84901 -15.54888 -14.78293 -14.53502 -14.37184 -14.03704 -13.41853 -12.91894 -12.61386 -12.11283 -11.97151 -11.43724 -10.91933 -10.64440 -10.38412 -9.37295 -8.26997 -6.40528 1.25751 1.41204 1.42231 1.54903 2.08658 2.27259 2.40479 3.08233 3.91430 4.01201 4.14733 4.45076 4.62702 4.68869 4.81763 5.26928 5.34851 5.59671 5.68929 5.91620 6.03588 6.38602 6.76613 7.18835 7.30881 8.85337 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.119431 B = 0.010242 C = 0.010080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 234.387955 B = 2733.287868 C = 2777.227025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.019 3.981 10 C 0.119 3.881 11 N -0.454 5.454 12 C -0.063 4.063 13 C -0.056 4.056 14 N -0.534 5.534 15 C 0.165 3.835 16 H 0.265 0.735 17 H -0.006 1.006 18 H -0.008 1.008 19 H 0.097 0.903 20 H 0.102 0.898 21 H 0.190 0.810 22 H 0.189 0.811 23 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 -5.716 1.221 7.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.179 1.179 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.094 0.906 9 C -0.019 4.019 10 C -0.002 4.002 11 N -0.134 5.134 12 C -0.197 4.197 13 C -0.204 4.204 14 N -0.254 5.254 15 C -0.117 4.117 16 H 0.073 0.927 17 H 0.012 0.988 18 H 0.010 0.990 19 H 0.115 0.885 20 H 0.120 0.880 21 H 0.207 0.793 22 H 0.206 0.794 23 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.733 -6.061 0.703 7.722 hybrid contribution 0.208 1.571 0.531 1.671 sum 4.941 -4.490 1.234 6.789 Atomic orbital electron populations 1.70120 1.08099 1.28007 1.51062 1.26011 0.95674 1.03680 0.94379 0.85311 0.79290 0.78330 0.77587 1.17869 1.20656 1.20677 1.21523 0.94021 0.91134 1.51353 0.90642 1.19270 0.94392 0.92716 0.95498 1.22095 0.94326 0.79014 1.04788 1.45989 1.41428 1.18935 1.07054 1.23206 1.06576 0.95950 0.93991 1.22690 1.06063 1.00465 0.91135 1.70215 1.20900 1.21057 1.13198 1.25380 1.00856 0.90491 0.94972 0.92660 0.98789 0.98994 0.88505 0.88002 0.79263 0.79367 0.76345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.45 0.28 -54.94 14 2 C 0.00 0.06 5.46 84.65 0.46 0.52 14 3 Si 0.97 41.91 29.54 68.60 2.03 43.94 14 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 14 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 14 6 H -0.28 -11.98 7.11 99.48 0.71 -11.28 14 7 C -0.54 -28.39 9.11 25.60 0.23 -28.16 14 8 H 0.08 3.65 7.74 -2.91 -0.02 3.62 14 9 C 0.02 0.94 5.30 29.85 0.16 1.10 14 10 C 0.12 4.37 6.09 86.38 0.53 4.89 14 11 N -0.45 -16.24 2.75 -529.07 -1.46 -17.70 14 12 C -0.06 -2.07 11.58 83.08 0.96 -1.11 14 13 C -0.06 -1.84 11.87 83.52 0.99 -0.85 14 14 N -0.53 -19.86 11.25 -200.31 -2.25 -22.11 14 15 C 0.17 5.82 12.56 180.27 2.26 8.09 14 16 H 0.26 14.73 8.31 -92.71 -0.77 13.96 14 17 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 14 18 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 14 19 H 0.10 3.24 8.14 -2.39 -0.02 3.22 14 20 H 0.10 3.35 8.14 -2.39 -0.02 3.33 14 21 H 0.19 5.15 8.06 -2.91 -0.02 5.12 14 22 H 0.19 4.91 8.06 -2.91 -0.02 4.88 14 23 H 0.22 6.34 8.06 -2.91 -0.02 6.32 14 Total: -1.00 -64.20 212.91 5.38 -58.82 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.18 Total: 7.52 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 5.60 Total: -15.53 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -3.42 Total: -94.75 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -64.20 5.38 -58.82 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019474739.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.418 kcal (2) G-P(sol) polarization free energy of solvation -64.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds