Wall clock time and date at job start Mon Mar 30 2020 02:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 115.54911 * 2 1 4 4 C 1.53000 * 117.49776 * 325.58519 * 3 2 1 5 5 C 1.52997 * 117.49537 * 34.20973 * 3 2 1 6 6 C 1.53000 * 117.49921 * 214.33372 * 2 1 3 7 7 C 1.52999 * 117.50180 * 145.67489 * 2 1 3 8 8 H 1.08998 * 117.49679 * 0.02562 * 7 2 1 9 9 C 1.50700 * 117.49762 * 215.00552 * 7 2 1 10 10 H 1.07998 * 120.00274 * 359.97438 * 9 7 2 11 11 C 1.37876 * 119.99525 * 179.97438 * 9 7 2 12 12 N 1.31514 * 120.00288 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99773 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47255 * 60.00284 * 13 11 9 15 15 H 1.48504 * 109.47275 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47431 * 300.00115 * 13 11 9 17 17 H 1.09001 * 109.47016 * 59.99829 * 1 2 3 18 18 H 1.09004 * 109.46983 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.47338 * 299.99938 * 1 2 3 20 20 H 1.09002 * 115.56020 * 179.89102 * 3 2 1 21 21 H 1.08990 * 117.49990 * 359.97438 * 4 3 2 22 22 H 1.09004 * 117.49237 * 214.97568 * 4 3 2 23 23 H 1.08999 * 117.49685 * 145.02116 * 5 3 2 24 24 H 1.08997 * 117.50044 * 359.97438 * 5 3 2 25 25 H 1.09004 * 117.49901 * 359.97411 * 6 2 1 26 26 H 1.09000 * 117.50262 * 144.97149 * 6 2 1 27 27 H 0.97002 * 119.99714 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.4844 2.5007 -0.7670 5 6 1.4819 2.5018 0.7630 6 6 2.2364 -1.1207 -0.7654 7 6 2.2365 -1.1208 0.7652 8 1 1.6113 -1.8584 1.2684 9 6 3.5290 -0.7805 1.4614 10 1 3.9230 0.2236 1.4081 11 6 4.2084 -1.7512 2.1665 12 7 3.7284 -2.9738 2.2319 13 14 5.8109 -1.3296 3.0289 14 1 5.5673 -0.2620 4.0320 15 1 6.3392 -2.5386 3.7105 16 1 6.8006 -0.8532 2.0294 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 3.2799 1.3807 0.0019 21 1 0.5505 2.2542 -1.2720 22 1 2.1104 3.2379 -1.2698 23 1 2.1061 3.2398 1.2668 24 1 0.5459 2.2562 1.2646 25 1 1.6112 -1.8582 -1.2687 26 1 3.1711 -0.8745 -1.2693 27 1 4.2063 -3.6566 2.7282 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023797052.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:26 Heat of formation + Delta-G solvation = 19.155553 kcal Electronic energy + Delta-G solvation = -9365.669296 eV Core-core repulsion = 7702.963175 eV Total energy + Delta-G solvation = -1662.706121 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 166.105 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.72542 -36.18846 -34.19083 -29.51623 -27.14638 -24.06511 -23.18460 -22.21895 -19.39570 -18.15836 -16.94265 -16.11855 -15.71864 -14.42954 -14.25493 -13.97529 -13.41382 -12.98682 -12.88705 -12.75915 -12.30531 -12.06787 -11.81023 -11.53340 -11.39893 -11.04106 -10.91319 -10.18632 -9.63575 -8.16974 -6.20356 1.40200 1.42284 1.50330 2.41012 2.88053 3.15594 3.69546 3.92558 4.16724 4.37400 4.38717 4.46292 4.69055 4.83177 4.87676 5.00396 5.09475 5.17118 5.18629 5.20930 5.39230 5.49090 5.60782 5.74189 5.82696 6.41268 6.86115 7.41377 8.94830 Molecular weight = 166.11amu Principal moments of inertia in cm(-1) A = 0.057684 B = 0.015481 C = 0.013316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.284024 B = 1808.210353 C = 2102.202712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.111 4.111 3 C -0.118 4.118 4 C -0.166 4.166 5 C -0.176 4.176 6 C -0.200 4.200 7 C 0.002 3.998 8 H 0.042 0.958 9 C -0.501 4.501 10 H 0.063 0.937 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.961 3.039 14 H -0.267 1.267 15 H -0.283 1.283 16 H -0.269 1.269 17 H 0.071 0.929 18 H 0.045 0.955 19 H 0.059 0.941 20 H 0.081 0.919 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 8.275 -3.456 9.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.112 4.112 3 C -0.137 4.137 4 C -0.203 4.203 5 C -0.213 4.213 6 C -0.238 4.238 7 C -0.016 4.016 8 H 0.060 0.940 9 C -0.538 4.538 10 H 0.081 0.919 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.785 3.215 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.195 1.195 17 H 0.090 0.910 18 H 0.064 0.936 19 H 0.078 0.922 20 H 0.099 0.901 21 H 0.120 0.880 22 H 0.120 0.880 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.518 8.099 -3.376 9.453 hybrid contribution 0.936 -0.410 0.470 1.124 sum -2.582 7.688 -2.906 8.615 Atomic orbital electron populations 1.21248 0.91818 1.01140 1.01770 1.21030 0.93883 0.89420 1.06830 1.21438 0.97276 0.88739 1.06212 1.23034 1.02829 1.00587 0.93855 1.22939 1.02680 1.00964 0.94736 1.23065 1.00676 1.01546 0.98530 1.19876 0.96359 0.95685 0.89697 0.93978 1.21013 1.06024 0.96058 1.30725 0.91928 1.25905 1.01353 0.94852 0.96997 1.70094 1.40792 1.03028 1.42929 0.85573 0.79392 0.77697 0.78796 1.19226 1.20834 1.19454 0.91047 0.93576 0.92200 0.90067 0.87993 0.88008 0.88667 0.88722 0.90817 0.91501 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.56 8.74 71.98 0.63 -2.93 15 2 C -0.11 -4.71 2.51 -52.18 -0.13 -4.85 15 3 C -0.12 -4.53 5.00 -10.79 -0.05 -4.59 15 4 C -0.17 -4.79 9.92 30.60 0.30 -4.49 15 5 C -0.18 -5.56 9.92 30.60 0.30 -5.25 15 6 C -0.20 -9.36 9.67 30.62 0.30 -9.07 15 7 C 0.00 0.12 5.29 -11.52 -0.06 0.06 15 8 H 0.04 2.48 7.90 -2.39 -0.02 2.46 15 9 C -0.50 -28.52 8.69 25.60 0.22 -28.30 15 10 H 0.06 3.46 6.12 -2.91 -0.02 3.44 15 11 C 0.01 0.41 5.46 84.65 0.46 0.87 15 12 N -0.93 -56.52 13.13 21.45 0.28 -56.23 15 13 Si 0.96 44.52 29.54 68.60 2.03 46.54 15 14 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 15 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 16 H -0.27 -12.07 7.11 99.48 0.71 -11.37 15 17 H 0.07 2.07 6.90 -2.39 -0.02 2.05 15 18 H 0.05 1.61 8.11 -2.38 -0.02 1.59 15 19 H 0.06 1.95 6.90 -2.39 -0.02 1.93 15 20 H 0.08 3.46 6.80 -2.39 -0.02 3.45 15 21 H 0.10 2.67 6.75 -2.39 -0.02 2.65 15 22 H 0.10 2.55 8.14 -2.38 -0.02 2.53 15 23 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 24 H 0.09 2.88 6.75 -2.39 -0.02 2.86 15 25 H 0.07 3.22 8.14 -2.38 -0.02 3.20 15 26 H 0.07 3.18 8.14 -2.39 -0.02 3.16 15 27 H 0.26 15.05 8.31 -92.71 -0.77 14.28 15 Total: -1.00 -61.98 226.30 5.41 -56.56 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.14 Total: 11.66 kcal Atomic # 6 Polarization: -60.50 SS G_CDS: 1.97 Total: -58.53 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -61.98 5.41 -56.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023797052.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.717 kcal (2) G-P(sol) polarization free energy of solvation -61.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds