Wall clock time and date at job start Mon Mar 30 2020 02:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08994 * 115.55357 * 325.86584 * 9 7 2 11 11 C 1.53010 * 117.49731 * 111.53276 * 9 7 2 12 12 C 1.53006 * 117.49751 * 180.18801 * 9 7 2 13 13 H 1.08997 * 117.49921 * 0.02562 * 12 9 7 14 14 C 1.53000 * 117.49471 * 145.02268 * 12 9 7 15 15 C 1.53782 * 113.61866 * 279.13838 * 14 12 9 16 16 C 1.53949 * 87.02280 * 220.04890 * 15 14 12 17 17 C 1.53781 * 113.61479 * 181.52933 * 14 12 9 18 18 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 19 19 H 1.08997 * 117.50075 * 214.98141 * 11 9 7 20 20 H 1.08998 * 117.49502 * 359.97438 * 11 9 7 21 21 H 1.09001 * 112.85255 * 50.34008 * 14 12 9 22 22 H 1.09004 * 113.61275 * 334.57214 * 15 14 12 23 23 H 1.09002 * 113.60959 * 105.46904 * 15 14 12 24 24 H 1.08997 * 113.54160 * 270.81240 * 16 15 14 25 25 H 1.08994 * 113.74432 * 139.94182 * 16 15 14 26 26 H 1.08995 * 113.61735 * 254.53690 * 17 14 12 27 27 H 1.08998 * 113.61262 * 25.43891 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.3136 -2.4982 0.5612 11 6 1.3239 -3.3625 -1.2557 12 6 2.0734 -3.7894 0.0089 13 1 3.1592 -3.6943 0.0074 14 6 1.5162 -4.9798 0.7922 15 6 1.7881 -4.9043 2.3039 16 6 2.0682 -6.4171 2.2477 17 6 2.4303 -6.2162 0.7667 18 1 -0.4850 0.8400 0.0004 19 1 0.4344 -3.9299 -1.5292 20 1 1.9164 -2.9863 -2.0897 21 1 0.4775 -5.1998 0.5458 22 1 2.6633 -4.3075 2.5608 23 1 0.9089 -4.6437 2.8931 24 1 1.1801 -7.0302 2.4006 25 1 2.9103 -6.7307 2.8645 26 1 2.0690 -7.0131 0.1167 27 1 3.4814 -5.9787 0.6026 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023899059.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:40 Heat of formation + Delta-G solvation = 9.086071 kcal Electronic energy + Delta-G solvation = -9174.010078 eV Core-core repulsion = 7510.867311 eV Total energy + Delta-G solvation = -1663.142767 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 166.105 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.95128 -36.98174 -34.17720 -28.09145 -26.37648 -26.32787 -22.35258 -21.41377 -20.24240 -18.53739 -16.68808 -16.20561 -16.06385 -14.85474 -14.12947 -13.54600 -13.23418 -13.21682 -12.97384 -12.84436 -12.54540 -12.25694 -11.66448 -11.34432 -11.26688 -11.15652 -10.93900 -10.23028 -10.02126 -8.21549 -6.27409 1.39334 1.39692 1.53244 2.38915 2.97516 3.46552 3.85634 3.92659 3.99456 4.30396 4.48379 4.60505 4.75509 4.87047 4.91976 4.97393 5.04111 5.07935 5.16531 5.20457 5.47208 5.50594 5.61552 5.73519 5.80203 6.34615 6.79953 7.35350 8.90447 Molecular weight = 166.11amu Principal moments of inertia in cm(-1) A = 0.082300 B = 0.011365 C = 0.011058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.136294 B = 2463.048937 C = 2531.423230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.055 0.945 9 C -0.001 4.001 10 H 0.044 0.956 11 C -0.206 4.206 12 C -0.147 4.147 13 H 0.082 0.918 14 C -0.084 4.084 15 C -0.139 4.139 16 C -0.127 4.127 17 C -0.126 4.126 18 H 0.265 0.735 19 H 0.075 0.925 20 H 0.068 0.932 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.945 -8.823 2.635 10.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.019 4.019 10 H 0.062 0.938 11 C -0.244 4.244 12 C -0.166 4.166 13 H 0.100 0.900 14 C -0.102 4.102 15 C -0.176 4.176 16 C -0.164 4.164 17 C -0.164 4.164 18 H 0.073 0.927 19 H 0.093 0.907 20 H 0.087 0.913 21 H 0.094 0.906 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.794 -8.708 2.640 9.858 hybrid contribution 0.047 1.112 -0.238 1.138 sum 3.841 -7.595 2.402 8.844 Atomic orbital electron populations 1.70100 1.07731 1.27760 1.50938 1.25928 0.95767 1.03089 0.94109 0.85379 0.78951 0.78631 0.77954 1.18809 1.20230 1.20051 1.21082 0.92679 0.91107 1.50400 0.92680 1.19747 0.96345 0.89430 0.96395 0.93803 1.23012 1.01716 1.07002 0.92679 1.22321 0.96700 0.97220 1.00348 0.89982 1.22105 0.98764 0.94007 0.95365 1.22917 1.01231 0.97685 0.95780 1.22809 1.02152 0.95045 0.96401 1.22894 0.99482 0.96695 0.97297 0.92651 0.90697 0.91328 0.90641 0.91067 0.92505 0.89262 0.90178 0.90711 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.13 21.45 0.28 -56.22 15 2 C 0.01 0.57 5.46 84.65 0.46 1.03 15 3 Si 0.97 44.58 29.54 68.60 2.03 46.60 15 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 15 7 C -0.52 -30.06 9.20 25.60 0.24 -29.83 15 8 H 0.05 3.14 7.81 -2.91 -0.02 3.12 15 9 C 0.00 -0.04 5.30 -11.53 -0.06 -0.10 15 10 H 0.04 2.61 7.90 -2.39 -0.02 2.59 15 11 C -0.21 -9.76 9.95 30.62 0.30 -9.45 15 12 C -0.15 -6.45 5.12 -10.77 -0.06 -6.50 15 13 H 0.08 3.58 8.13 -2.39 -0.02 3.56 15 14 C -0.08 -2.98 3.81 -10.27 -0.04 -3.02 15 15 C -0.14 -4.47 7.66 31.18 0.24 -4.23 15 16 C -0.13 -3.11 8.09 31.18 0.25 -2.85 15 17 C -0.13 -3.46 7.65 31.12 0.24 -3.23 15 18 H 0.26 15.05 8.31 -92.71 -0.77 14.28 15 19 H 0.07 3.30 8.14 -2.39 -0.02 3.28 15 20 H 0.07 3.26 8.14 -2.39 -0.02 3.24 15 21 H 0.08 2.71 8.12 -2.39 -0.02 2.69 15 22 H 0.07 2.41 8.10 -2.39 -0.02 2.39 15 23 H 0.06 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 15 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 15 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 27 H 0.08 2.15 8.09 -2.39 -0.02 2.13 15 Total: -1.00 -62.57 231.51 5.00 -57.57 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.11 Total: 10.23 kcal Atomic # 6 Polarization: -59.76 SS G_CDS: 1.58 Total: -58.18 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.28 Total: -56.22 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -62.57 5.00 -57.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023899059.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.659 kcal (2) G-P(sol) polarization free energy of solvation -62.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds