Wall clock time and date at job start Mon Mar 30 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.35798 * 60.28394 * 9 7 2 11 11 C 1.52870 * 109.35878 * 300.69284 * 9 7 2 12 12 C 1.53293 * 108.58516 * 185.27464 * 11 9 7 13 13 C 1.52872 * 108.59190 * 74.44292 * 12 11 9 14 14 C 1.52074 * 110.51345 * 305.11245 * 13 12 11 15 15 H 1.08996 * 114.26438 * 166.23297 * 14 13 12 16 16 C 1.52307 * 119.83621 * 310.44847 * 14 13 12 17 17 C 1.52063 * 120.02018 * 21.70144 * 14 13 12 18 18 H 1.08994 * 116.54098 * 143.01354 * 17 14 13 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.62046 * 305.00492 * 11 9 7 21 21 H 1.09007 * 109.61762 * 65.54326 * 11 9 7 22 22 H 1.09003 * 109.61704 * 314.71541 * 12 11 9 23 23 H 1.09001 * 109.76830 * 194.27027 * 12 11 9 24 24 H 1.09003 * 109.26658 * 184.84337 * 13 12 11 25 25 H 1.08996 * 109.23581 * 65.36143 * 13 12 11 26 26 H 1.08998 * 117.54077 * 2.44324 * 16 14 13 27 27 H 1.09007 * 117.59262 * 217.16566 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6285 -2.5569 -0.8934 11 6 0.3606 -2.5701 1.2400 12 6 -0.2952 -3.9547 1.2921 13 6 0.7562 -4.9761 1.7259 14 6 1.9693 -4.9135 0.8109 15 1 2.8459 -5.4367 1.1928 16 6 1.7811 -4.9449 -0.7001 17 6 2.2458 -3.6579 -0.0011 18 1 3.2917 -3.3759 -0.1209 19 1 -0.4849 0.8400 0.0004 20 1 0.9655 -2.4178 2.1340 21 1 -0.4105 -1.8019 1.1815 22 1 -0.6748 -4.2173 0.3046 23 1 -1.1160 -3.9471 2.0094 24 1 0.3250 -5.9763 1.6837 25 1 1.0656 -4.7607 2.7486 26 1 0.7600 -4.9715 -1.0804 27 1 2.5171 -5.4922 -1.2893 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026321589.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:23 Heat of formation + Delta-G solvation = 0.589652 kcal Electronic energy + Delta-G solvation = -9605.894884 eV Core-core repulsion = 7942.383685 eV Total energy + Delta-G solvation = -1663.511199 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 166.105 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.52119 -33.20735 -31.69694 -29.46472 -25.30346 -22.72542 -21.34333 -20.04111 -17.35627 -16.54165 -14.94732 -14.37260 -13.39850 -12.99002 -12.69275 -12.31512 -11.93659 -11.23867 -10.81886 -10.65939 -10.59437 -10.36394 -9.92326 -9.83763 -9.44212 -8.85781 -8.72443 -8.54582 -8.14391 -5.92839 -3.97928 3.35329 3.39657 3.42467 4.47948 4.64377 5.35613 5.50686 5.66772 5.76742 5.88325 6.12582 6.22635 6.37227 6.48581 6.61567 6.78477 6.80665 6.85301 6.97202 7.14134 7.36377 7.63955 7.81838 8.06681 8.20368 8.53170 9.04411 9.65496 11.13068 Molecular weight = 166.11amu Principal moments of inertia in cm(-1) A = 0.075155 B = 0.015580 C = 0.014094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.473097 B = 1796.766064 C = 1986.136687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.074 3.926 10 H 0.029 0.971 11 C -0.105 4.105 12 C -0.124 4.124 13 C -0.080 4.080 14 C -0.156 4.156 15 H 0.081 0.919 16 C -0.198 4.198 17 C -0.111 4.111 18 H 0.087 0.913 19 H 0.259 0.741 20 H 0.037 0.963 21 H 0.089 0.911 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 -6.147 1.602 6.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.056 3.944 10 H 0.047 0.953 11 C -0.143 4.143 12 C -0.162 4.162 13 C -0.118 4.118 14 C -0.174 4.174 15 H 0.099 0.901 16 C -0.235 4.235 17 C -0.129 4.129 18 H 0.105 0.895 19 H 0.069 0.931 20 H 0.056 0.944 21 H 0.107 0.893 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.977 -6.019 1.597 6.303 hybrid contribution 0.560 0.816 -0.016 0.990 sum 1.538 -5.203 1.581 5.651 Atomic orbital electron populations 1.69879 1.05840 1.26366 1.51031 1.24967 0.94860 0.98978 0.95301 0.86685 0.79608 0.83311 0.78540 1.20356 1.21347 1.20366 1.21248 0.92757 0.90611 1.50157 0.92813 1.18221 0.91610 0.90105 0.94452 0.95333 1.21615 1.00186 0.93810 0.98703 1.21724 0.96805 0.97865 0.99801 1.20777 0.94827 0.98184 0.97995 1.21741 0.99208 1.03938 0.92547 0.90100 1.23036 1.01616 1.04641 0.94251 1.22679 1.00658 0.89272 1.00268 0.89463 0.93059 0.94415 0.89313 0.93012 0.93760 0.93466 0.92516 0.89468 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 11.33 55.43 0.63 -25.18 15 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 15 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.51 -14.29 8.54 -34.44 -0.29 -14.58 15 8 H 0.05 1.48 7.45 -52.49 -0.39 1.09 15 9 C 0.07 1.90 2.05 -91.98 -0.19 1.72 15 10 H 0.03 0.80 8.06 -51.93 -0.42 0.38 15 11 C -0.11 -2.55 4.87 -26.65 -0.13 -2.68 15 12 C -0.12 -2.50 5.70 -26.65 -0.15 -2.65 15 13 C -0.08 -1.44 5.93 -27.27 -0.16 -1.61 15 14 C -0.16 -2.94 6.00 -91.92 -0.55 -3.49 15 15 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 16 C -0.20 -3.74 9.66 -26.75 -0.26 -4.00 15 17 C -0.11 -2.43 5.61 -90.90 -0.51 -2.94 15 18 H 0.09 1.92 7.68 -51.93 -0.40 1.52 15 19 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 20 H 0.04 0.93 8.04 -51.93 -0.42 0.51 15 21 H 0.09 2.39 6.19 -51.92 -0.32 2.06 15 22 H 0.05 1.05 7.11 -51.93 -0.37 0.68 15 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 15 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.09 1.66 7.26 -51.93 -0.38 1.28 15 27 H 0.08 1.28 8.14 -51.92 -0.42 0.86 15 LS Contribution 216.65 15.07 3.26 3.26 Total: -1.00 -28.17 216.65 -7.41 -35.58 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -3.94 Total: -1.56 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: -2.34 Total: -28.65 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.63 Total: -25.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -28.17 -7.41 -35.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026321589.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.173 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds