Wall clock time and date at job start Mon Mar 30 2020 02:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 N 1.46497 * 109.47128 * 180.02562 * 9 7 2 11 11 C 1.35963 * 126.07094 * 125.00118 * 10 9 7 12 12 C 1.35705 * 107.55016 * 179.97438 * 11 10 9 13 13 N 1.40802 * 126.06892 * 179.97438 * 12 11 10 14 14 C 1.40217 * 107.86798 * 0.02562 * 12 11 10 15 15 N 1.30868 * 108.35810 * 359.71614 * 14 12 11 16 16 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 17 17 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 18 18 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 19 19 H 1.08004 * 126.22597 * 359.96280 * 11 10 9 20 20 H 0.97010 * 119.99619 * 0.02562 * 13 12 11 21 21 H 0.96991 * 120.00553 * 180.02562 * 13 12 11 22 22 H 1.07999 * 125.82135 * 179.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 7 2.2030 -3.6127 -0.0119 11 6 2.2475 -4.6328 0.8859 12 6 3.2698 -5.4497 0.5268 13 7 3.6626 -6.6274 1.1911 14 6 3.8665 -4.9123 -0.6227 15 7 3.2253 -3.8186 -0.9470 16 1 -0.4849 0.8401 0.0041 17 1 0.6280 -2.5591 0.8866 18 1 0.6206 -2.5548 -0.8933 19 1 1.5890 -4.7683 1.7312 20 1 3.1852 -6.9194 1.9836 21 1 4.4103 -7.1467 0.8565 22 1 4.7088 -5.3319 -1.1527 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035728297.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:32 Heat of formation + Delta-G solvation = 50.031945 kcal Electronic energy + Delta-G solvation = -8988.321692 eV Core-core repulsion = 7157.988218 eV Total energy + Delta-G solvation = -1830.333475 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.67497 -35.88629 -34.70934 -32.87058 -29.89743 -27.87241 -25.08655 -21.83833 -21.41241 -18.65858 -17.94347 -16.69471 -16.44848 -15.84064 -15.62534 -14.71763 -14.18981 -13.72770 -13.27095 -12.93316 -12.71845 -12.27871 -11.86805 -11.40978 -11.28125 -10.72207 -10.10224 -8.37014 -7.86365 -6.46373 1.25859 1.37641 1.39490 1.52818 2.00419 2.22662 2.36741 2.98917 3.42757 4.10794 4.30666 4.64291 4.88326 4.97950 5.19308 5.57949 5.75578 5.90449 6.31543 6.67629 6.93288 7.10769 7.23824 7.44827 8.75883 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.095489 B = 0.011720 C = 0.011138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.156873 B = 2388.411740 C = 2513.380023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.974 3.026 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.276 3.724 10 N -0.356 5.356 11 C -0.051 4.051 12 C 0.045 3.955 13 N -0.865 5.865 14 C -0.020 4.020 15 N -0.316 5.316 16 H 0.272 0.728 17 H 0.049 0.951 18 H 0.016 0.984 19 H 0.182 0.818 20 H 0.401 0.599 21 H 0.405 0.595 22 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.191 -8.789 2.976 10.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.798 3.202 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.157 3.843 10 N -0.143 5.143 11 C -0.200 4.200 12 C -0.065 4.065 13 N -0.415 5.415 14 C -0.207 4.207 15 N -0.141 5.141 16 H 0.081 0.919 17 H 0.067 0.933 18 H 0.034 0.966 19 H 0.199 0.801 20 H 0.230 0.770 21 H 0.234 0.766 22 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.820 -7.517 2.106 9.175 hybrid contribution 0.206 -0.070 0.675 0.709 sum 5.026 -7.587 2.781 9.516 Atomic orbital electron populations 1.70016 1.07279 1.28676 1.50164 1.25798 0.95896 1.02876 0.93895 0.85260 0.78381 0.78166 0.78352 1.19861 1.19785 1.19365 1.21478 0.93376 0.91103 1.52550 0.93012 1.19161 0.85932 0.81827 0.97427 1.48825 1.25216 1.20142 1.20098 1.22227 1.04629 0.92635 1.00467 1.17738 0.98152 0.93516 0.97074 1.41273 1.40852 1.25222 1.34139 1.23994 1.03149 0.95067 0.98446 1.77138 1.02171 1.19066 1.15774 0.91864 0.93267 0.96607 0.80133 0.76982 0.76574 0.77924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.61 13.29 21.45 0.28 -53.33 14 2 C 0.02 0.87 5.46 84.66 0.46 1.33 14 3 Si 0.97 44.58 29.54 68.60 2.03 46.61 14 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 14 5 H -0.27 -12.03 7.11 99.48 0.71 -11.33 14 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 14 7 C -0.55 -31.99 9.24 25.60 0.24 -31.75 14 8 H 0.05 3.14 7.81 -2.91 -0.02 3.12 14 9 C 0.28 15.01 6.27 85.63 0.54 15.55 14 10 N -0.36 -17.28 3.70 -350.64 -1.30 -18.57 14 11 C -0.05 -2.00 11.52 83.47 0.96 -1.04 14 12 C 0.04 1.53 7.26 37.59 0.27 1.80 14 13 N -0.86 -19.97 9.20 -51.74 -0.48 -20.45 14 14 C -0.02 -0.74 12.03 85.32 1.03 0.28 14 15 N -0.32 -15.05 12.40 -56.78 -0.70 -15.76 14 16 H 0.27 14.70 8.31 -92.71 -0.77 13.93 14 17 H 0.05 2.64 8.07 -2.38 -0.02 2.62 14 18 H 0.02 0.93 8.14 -2.39 -0.02 0.91 14 19 H 0.18 5.99 8.06 -2.91 -0.02 5.96 14 20 H 0.40 7.63 8.96 -92.70 -0.83 6.80 14 21 H 0.41 7.25 8.96 -92.72 -0.83 6.42 14 22 H 0.20 5.69 8.06 -2.91 -0.02 5.66 14 Total: -1.00 -66.93 207.60 2.91 -64.02 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -0.42 Total: 11.31 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 3.50 Total: -13.83 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -2.19 Total: -108.11 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -66.93 2.91 -64.02 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035728297.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.050 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds