Wall clock time and date at job start Mon Mar 30 2020 01:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47205 * 89.97786 * 6 5 4 8 8 H 1.08006 * 119.99349 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00319 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99749 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00098 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46957 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46868 * 120.00160 * 11 9 7 14 14 H 1.48491 * 109.47344 * 240.00240 * 11 9 7 15 15 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 16 16 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 17 17 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 18 18 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 19 19 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 20 20 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 21 21 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 22 22 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 23 23 H 0.96997 * 119.99432 * 180.02562 * 10 9 7 24 24 H 1.07994 * 125.89572 * 180.02562 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 6 5.1661 -1.8929 1.4206 8 1 4.6003 -1.4774 2.2415 9 6 6.2585 -2.6955 1.6727 10 7 6.9471 -3.2018 0.6731 11 14 6.7612 -3.0626 3.4339 12 1 5.8308 -2.3781 4.3671 13 1 6.7080 -4.5280 3.6686 14 1 8.1441 -2.5740 3.6660 15 6 2.2595 -1.1081 -0.0002 16 1 -0.3634 -0.0005 1.0276 17 1 -0.3634 0.8902 -0.5135 18 1 -0.3633 -0.8898 -0.5142 19 1 1.9171 2.1325 0.0009 20 1 4.4165 1.3438 0.0033 21 1 4.5268 -2.5289 -0.5135 22 1 5.5803 -1.0941 -0.5145 23 1 7.7153 -3.7667 0.8505 24 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039078099.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:54 Heat of formation + Delta-G solvation = 42.043271 kcal Electronic energy + Delta-G solvation = -8780.843178 eV Core-core repulsion = 7081.015111 eV Total energy + Delta-G solvation = -1699.828068 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 165.085 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.27002 -33.53753 -32.02285 -29.23082 -27.17483 -25.20273 -22.47290 -19.48494 -18.53333 -16.31387 -15.97287 -14.64676 -14.33594 -13.39485 -12.57862 -12.31617 -12.21915 -11.85001 -11.69178 -11.26479 -10.90295 -10.50992 -10.12215 -9.48926 -9.21967 -8.25627 -7.61285 -7.12131 -5.86537 -3.88455 3.01659 3.38381 3.45192 3.50835 3.62803 4.03376 4.59753 5.04866 5.37539 5.46774 5.54925 5.61317 6.00492 6.45352 6.65040 7.10247 7.28401 7.70794 7.75324 8.00445 8.10386 8.16809 8.29492 8.59958 9.17936 9.73989 11.22943 Molecular weight = 165.08amu Principal moments of inertia in cm(-1) A = 0.082976 B = 0.011709 C = 0.011342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.365191 B = 2390.659618 C = 2468.051485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.466 5.466 3 C -0.039 4.039 4 C -0.195 4.195 5 C -0.112 4.112 6 C 0.077 3.923 7 C -0.500 4.500 8 H 0.055 0.945 9 C 0.053 3.947 10 N -0.899 5.899 11 Si 0.892 3.108 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.285 1.285 15 C -0.044 4.044 16 H 0.062 0.938 17 H 0.073 0.927 18 H 0.075 0.925 19 H 0.149 0.851 20 H 0.127 0.873 21 H 0.021 0.979 22 H 0.024 0.976 23 H 0.258 0.742 24 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.415 5.458 -0.941 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.145 5.145 3 C -0.168 4.168 4 C -0.221 4.221 5 C -0.118 4.118 6 C 0.040 3.960 7 C -0.538 4.538 8 H 0.073 0.927 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.720 3.280 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.170 4.170 16 H 0.080 0.920 17 H 0.091 0.909 18 H 0.094 0.906 19 H 0.166 0.834 20 H 0.145 0.855 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.655 5.338 -0.974 11.957 hybrid contribution 0.287 -0.222 1.031 1.092 sum -10.368 5.116 0.056 11.562 Atomic orbital electron populations 1.21799 0.78896 1.03193 1.02173 1.43789 1.05084 1.06425 1.59164 1.21566 0.90853 0.90710 1.13656 1.20873 0.95154 0.95560 1.10508 1.20319 0.94957 0.94100 1.02428 1.17715 0.88856 0.92588 0.96846 1.21235 1.11567 1.28781 0.92257 0.92686 1.25030 0.96572 0.96234 0.96898 1.69981 1.19336 1.34211 1.30391 0.86537 0.78331 0.77832 0.85326 1.19836 1.21169 1.21099 1.21574 0.90410 0.90546 1.14469 0.91984 0.90871 0.90620 0.83366 0.85483 0.96119 0.95805 0.93200 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 11.12 59.85 0.67 1.62 14 2 N -0.47 -8.16 3.15 -124.53 -0.39 -8.56 14 3 C -0.04 -0.71 11.43 -16.75 -0.19 -0.90 14 4 C -0.20 -4.18 10.81 -39.78 -0.43 -4.61 14 5 C -0.11 -2.69 5.33 -104.82 -0.56 -3.25 14 6 C 0.08 2.16 5.47 -29.03 -0.16 2.00 14 7 C -0.50 -14.90 9.09 -34.44 -0.31 -15.21 14 8 H 0.05 1.64 7.74 -52.48 -0.41 1.24 14 9 C 0.05 1.56 5.46 -17.82 -0.10 1.47 14 10 N -0.90 -27.75 13.29 55.43 0.74 -27.01 14 11 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 14 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 14 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 14 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 14 15 C -0.04 -0.91 11.35 -16.75 -0.19 -1.10 14 16 H 0.06 0.66 8.14 -51.93 -0.42 0.24 14 17 H 0.07 0.69 8.14 -51.93 -0.42 0.26 14 18 H 0.08 0.77 8.14 -51.93 -0.42 0.35 14 19 H 0.15 2.09 8.06 -52.49 -0.42 1.66 14 20 H 0.13 2.60 8.06 -52.49 -0.42 2.17 14 21 H 0.02 0.59 8.14 -51.93 -0.42 0.17 14 22 H 0.02 0.70 8.14 -51.93 -0.42 0.27 14 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 14 24 H 0.15 2.91 8.06 -52.49 -0.42 2.49 14 LS Contribution 218.28 15.07 3.29 3.29 Total: -1.00 -32.96 218.28 -5.58 -38.54 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -2.92 Total: -3.70 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.27 Total: -19.98 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.34 Total: -35.57 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -32.96 -5.58 -38.54 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039078099.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.585 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds