Wall clock time and date at job start Mon Mar 30 2020 01:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47205 * 89.97786 * 6 5 4 8 8 H 1.08006 * 119.99349 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00319 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99749 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00098 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46957 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46868 * 120.00160 * 11 9 7 14 14 H 1.48491 * 109.47344 * 240.00240 * 11 9 7 15 15 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 16 16 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 17 17 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 18 18 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 19 19 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 20 20 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 21 21 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 22 22 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 23 23 H 0.96997 * 119.99432 * 180.02562 * 10 9 7 24 24 H 1.07994 * 125.89572 * 180.02562 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 6 5.1661 -1.8929 1.4206 8 1 4.6003 -1.4774 2.2415 9 6 6.2585 -2.6955 1.6727 10 7 6.9471 -3.2018 0.6731 11 14 6.7612 -3.0626 3.4339 12 1 5.8308 -2.3781 4.3671 13 1 6.7080 -4.5280 3.6686 14 1 8.1441 -2.5740 3.6660 15 6 2.2595 -1.1081 -0.0002 16 1 -0.3634 -0.0005 1.0276 17 1 -0.3634 0.8902 -0.5135 18 1 -0.3633 -0.8898 -0.5142 19 1 1.9171 2.1325 0.0009 20 1 4.4165 1.3438 0.0033 21 1 4.5268 -2.5289 -0.5135 22 1 5.5803 -1.0941 -0.5145 23 1 7.7153 -3.7667 0.8505 24 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039078099.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:54 Heat of formation + Delta-G solvation = 21.291608 kcal Electronic energy + Delta-G solvation = -8781.743038 eV Core-core repulsion = 7081.015111 eV Total energy + Delta-G solvation = -1700.727927 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 165.085 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.78307 -35.56067 -33.75806 -31.03706 -28.81614 -26.80505 -24.49048 -20.94264 -20.20354 -18.45036 -17.63464 -16.38764 -15.87315 -14.70907 -14.38845 -14.27048 -13.75535 -13.46860 -13.13919 -12.87493 -12.82410 -12.45254 -12.10046 -11.53246 -11.45535 -10.55762 -9.14421 -8.80033 -8.11771 -6.26754 1.39199 1.40948 1.52128 1.55576 2.26733 2.33535 2.50240 3.14820 4.15374 4.32784 4.48495 4.54680 4.75969 4.86304 4.96381 5.28063 5.41077 5.52083 5.81632 5.89730 6.20460 6.37286 6.52706 6.78280 6.87061 7.41205 8.95477 Molecular weight = 165.08amu Principal moments of inertia in cm(-1) A = 0.082976 B = 0.011709 C = 0.011342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.365191 B = 2390.659618 C = 2468.051485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.457 5.457 3 C -0.008 4.008 4 C -0.237 4.237 5 C -0.161 4.161 6 C 0.087 3.913 7 C -0.521 4.521 8 H 0.049 0.951 9 C -0.003 4.003 10 N -0.935 5.935 11 Si 0.969 3.031 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.276 1.276 15 C -0.044 4.044 16 H 0.078 0.922 17 H 0.106 0.894 18 H 0.090 0.910 19 H 0.198 0.802 20 H 0.122 0.878 21 H -0.005 1.005 22 H -0.009 1.009 23 H 0.264 0.736 24 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.353 6.333 0.205 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.134 5.134 3 C -0.138 4.138 4 C -0.262 4.262 5 C -0.168 4.168 6 C 0.049 3.951 7 C -0.559 4.559 8 H 0.067 0.933 9 C -0.200 4.200 10 N -0.575 5.575 11 Si 0.793 3.207 12 H -0.191 1.191 13 H -0.200 1.200 14 H -0.201 1.201 15 C -0.172 4.172 16 H 0.097 0.903 17 H 0.124 0.876 18 H 0.109 0.891 19 H 0.215 0.785 20 H 0.140 0.860 21 H 0.013 0.987 22 H 0.009 0.991 23 H 0.073 0.927 24 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.632 6.220 0.164 14.081 hybrid contribution 0.811 -0.462 0.613 1.116 sum -11.822 5.758 0.777 13.172 Atomic orbital electron populations 1.22248 0.74819 1.05703 1.04049 1.44129 1.07435 1.05060 1.56728 1.22132 0.89423 0.92659 1.09636 1.20969 0.97206 0.94441 1.13612 1.20102 0.94854 0.95157 1.06638 1.17421 0.90067 0.92008 0.95568 1.21496 1.12191 1.29368 0.92875 0.93251 1.26005 0.96290 0.95681 1.01990 1.70111 1.19799 1.34621 1.33011 0.85339 0.78119 0.78066 0.79136 1.19104 1.19968 1.20129 1.21580 0.89987 0.92052 1.13627 0.90324 0.87588 0.89106 0.78504 0.86018 0.98685 0.99099 0.92717 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 11.12 127.77 1.42 2.76 14 2 N -0.46 -14.62 3.15 -547.90 -1.72 -16.34 14 3 C -0.01 -0.26 11.43 83.21 0.95 0.69 14 4 C -0.24 -10.21 10.81 22.14 0.24 -9.97 14 5 C -0.16 -7.97 5.33 -19.99 -0.11 -8.07 14 6 C 0.09 5.15 5.47 29.10 0.16 5.31 14 7 C -0.52 -32.14 9.09 25.60 0.23 -31.91 14 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 14 9 C 0.00 -0.16 5.46 84.65 0.46 0.30 14 10 N -0.93 -59.25 13.29 21.45 0.28 -58.97 14 11 Si 0.97 46.47 29.54 68.60 2.03 48.50 14 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 14 13 H -0.27 -12.60 7.11 99.48 0.71 -11.89 14 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 14 15 C -0.04 -1.80 11.35 83.21 0.94 -0.86 14 16 H 0.08 1.29 8.14 -2.39 -0.02 1.27 14 17 H 0.11 1.36 8.14 -2.38 -0.02 1.34 14 18 H 0.09 1.47 8.14 -2.39 -0.02 1.45 14 19 H 0.20 4.49 8.06 -2.91 -0.02 4.46 14 20 H 0.12 5.15 8.06 -2.91 -0.02 5.13 14 21 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 14 22 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 14 23 H 0.26 15.54 8.31 -92.71 -0.77 14.77 14 24 H 0.16 6.14 8.06 -2.91 -0.02 6.11 14 Total: -1.00 -73.65 218.28 6.05 -67.60 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: 1.16 Total: 0.96 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 4.30 Total: -41.75 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -1.44 Total: -75.31 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -73.65 6.05 -67.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039078099.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.894 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds