Wall clock time and date at job start Mon Mar 30 2020 01:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34664 * 126.59120 * 2 1 4 4 N 1.34134 * 108.01786 * 179.81255 * 3 2 1 5 5 C 1.30496 * 109.25675 * 0.37372 * 4 3 2 6 6 N 1.35047 * 108.70161 * 359.62603 * 5 4 3 7 7 C 1.46497 * 126.40169 * 180.20738 * 6 5 4 8 8 C 1.50695 * 109.46894 * 265.02593 * 7 6 5 9 9 H 1.07995 * 120.00378 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99730 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00223 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00041 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47194 * 89.99929 * 12 10 8 14 14 H 1.48500 * 109.46905 * 210.00124 * 12 10 8 15 15 H 1.48502 * 109.46714 * 329.99811 * 12 10 8 16 16 H 1.08997 * 109.47445 * 269.96014 * 1 2 3 17 17 H 1.09008 * 109.46455 * 29.95840 * 1 2 3 18 18 H 1.08999 * 109.47529 * 149.95028 * 1 2 3 19 19 H 1.08003 * 125.99562 * 0.07282 * 3 2 1 20 20 H 1.08002 * 125.65353 * 179.89694 * 5 4 3 21 21 H 1.09004 * 109.46648 * 25.02578 * 7 6 5 22 22 H 1.08998 * 109.47362 * 145.02540 * 7 6 5 23 23 H 0.96996 * 119.99860 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 0.0042 5 6 3.5968 -0.6509 -0.0013 6 7 2.3229 -1.0991 -0.0008 7 6 1.8942 -2.5000 -0.0016 8 6 1.6286 -2.9432 -1.4172 9 1 1.7650 -2.2506 -2.2345 10 6 1.2113 -4.2330 -1.6689 11 7 1.0457 -5.0767 -0.6737 12 14 0.8827 -4.7827 -3.4238 13 1 2.1294 -5.3359 -4.0109 14 1 -0.1718 -5.8282 -3.4257 15 1 0.4292 -3.6207 -4.2296 16 1 -0.3634 -0.0007 1.0276 17 1 -0.3632 0.8905 -0.5132 18 1 -0.3634 -0.8895 -0.5146 19 1 1.9865 2.1118 0.0011 20 1 4.4818 -1.2699 -0.0013 21 1 2.6787 -3.1202 0.4322 22 1 0.9831 -2.6015 0.5880 23 1 0.7518 -5.9839 -0.8508 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039078174.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:51 Heat of formation + Delta-G solvation = 43.441347 kcal Electronic energy + Delta-G solvation = -9100.278750 eV Core-core repulsion = 7335.085397 eV Total energy + Delta-G solvation = -1765.193353 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.11551 -34.01568 -32.07276 -31.06012 -27.22257 -25.65314 -23.23895 -20.46851 -18.99081 -16.81667 -16.00761 -14.57374 -14.31571 -13.54223 -12.96285 -12.54577 -12.28341 -12.08011 -11.75773 -11.55052 -11.08295 -10.89983 -10.34125 -9.97633 -9.18623 -8.71787 -8.48124 -7.48808 -6.35096 -4.43322 2.97615 3.16114 3.23038 3.27902 3.93165 3.98656 4.25176 4.99878 5.47602 5.69407 5.84737 6.10689 6.14870 6.34527 6.47914 6.78164 6.91780 7.45626 7.58552 7.64630 7.79859 8.18102 8.65049 8.91497 9.24926 10.73184 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.068316 B = 0.014146 C = 0.013722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.764637 B = 1978.951528 C = 2039.961520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.021 4.021 3 C -0.058 4.058 4 N -0.516 5.516 5 C 0.168 3.832 6 N -0.424 5.424 7 C 0.230 3.770 8 C -0.542 4.542 9 H 0.065 0.935 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.906 3.094 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.271 1.271 16 H 0.061 0.939 17 H 0.069 0.931 18 H 0.075 0.925 19 H 0.156 0.844 20 H 0.194 0.806 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.196 4.421 0.485 4.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.140 4.140 3 C -0.207 4.207 4 N -0.235 5.235 5 C -0.115 4.115 6 N -0.103 5.103 7 C 0.111 3.889 8 C -0.580 4.580 9 H 0.083 0.917 10 C -0.137 4.137 11 N -0.527 5.527 12 Si 0.733 3.267 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.196 1.196 16 H 0.079 0.921 17 H 0.088 0.912 18 H 0.094 0.906 19 H 0.173 0.827 20 H 0.211 0.789 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.598 4.529 0.545 4.601 hybrid contribution -0.835 -1.050 -0.923 1.628 sum -1.433 3.480 -0.378 3.782 Atomic orbital electron populations 1.20136 0.88274 1.03185 1.01665 1.21192 0.94571 0.87302 1.10901 1.21824 0.88966 0.97778 1.12150 1.70123 1.22518 1.09437 1.21412 1.24608 0.88227 0.91322 1.07299 1.45978 1.06281 1.09024 1.49003 1.19755 0.97345 0.72733 0.99058 1.21297 1.47556 0.97434 0.91724 0.91667 1.24956 0.94568 0.96052 0.98167 1.69922 1.45523 1.06006 1.31278 0.86347 0.78250 0.78533 0.83548 1.20249 1.20834 1.19598 0.92062 0.91239 0.90612 0.82687 0.78950 0.93224 0.93472 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.08 36.01 0.36 -0.93 14 2 C -0.02 -0.43 6.95 -81.60 -0.57 -1.00 14 3 C -0.06 -1.17 11.79 -17.81 -0.21 -1.38 14 4 N -0.52 -11.23 11.25 -14.66 -0.16 -11.39 14 5 C 0.17 3.60 12.56 -90.37 -1.13 2.46 14 6 N -0.42 -9.58 2.73 -115.28 -0.32 -9.90 14 7 C 0.23 5.66 5.55 -5.20 -0.03 5.63 14 8 C -0.54 -14.44 9.39 -34.44 -0.32 -14.77 14 9 H 0.07 1.79 7.81 -52.49 -0.41 1.38 14 10 C 0.07 1.76 5.46 -17.82 -0.10 1.67 14 11 N -0.89 -24.49 13.29 55.43 0.74 -23.76 14 12 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 14 13 H -0.28 -6.24 7.11 56.52 0.40 -5.83 14 14 H -0.28 -6.32 7.11 56.52 0.40 -5.91 14 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 14 16 H 0.06 0.95 8.14 -51.93 -0.42 0.53 14 17 H 0.07 1.00 8.14 -51.92 -0.42 0.58 14 18 H 0.07 1.44 7.96 -51.93 -0.41 1.03 14 19 H 0.16 2.62 8.06 -52.48 -0.42 2.20 14 20 H 0.19 3.54 8.06 -52.49 -0.42 3.12 14 21 H 0.05 1.24 8.13 -51.93 -0.42 0.82 14 22 H 0.05 1.19 8.02 -51.93 -0.42 0.78 14 23 H 0.27 6.98 8.31 -40.82 -0.34 6.64 14 LS Contribution 212.53 15.07 3.20 3.20 Total: -1.00 -28.97 212.53 -6.05 -35.02 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -2.49 Total: -0.42 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.00 Total: -8.31 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.26 Total: -45.05 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -28.97 -6.05 -35.02 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039078174.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.458 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds